Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48505 * 109.47061 * 269.99784 * 3 2 1 5 5 H 1.48506 * 109.47411 * 29.99723 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00226 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47151 * 180.02562 * 9 7 2 11 11 O 1.21280 * 120.00055 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00109 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99760 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.33381 * 125.20534 * 90.00074 * 14 13 12 16 16 C 1.38427 * 114.92374 * 180.02562 * 15 14 13 17 17 C 1.33387 * 114.91991 * 0.25034 * 16 15 14 18 18 S 1.75886 * 109.59194 * 359.63459 * 17 16 15 19 19 H 0.97003 * 119.99549 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47057 * 59.99634 * 9 7 2 21 21 H 1.09003 * 109.46751 * 300.00271 * 9 7 2 22 22 H 0.96998 * 119.99295 * 359.97438 * 12 10 9 23 23 H 1.09000 * 109.46999 * 60.00096 * 13 12 10 24 24 H 1.08995 * 109.47363 * 300.00014 * 13 12 10 25 25 H 1.08001 * 122.53741 * 0.05729 * 15 14 13 26 26 H 1.08002 * 122.53759 * 179.97438 * 16 15 14 27 27 H 1.08002 * 125.20431 * 179.75072 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2258 -3.5367 0.0010 12 7 5.3390 -2.8611 0.0020 13 6 5.8273 -4.2423 0.0024 14 6 7.3343 -4.2423 0.0029 15 6 8.1030 -4.2420 1.0930 16 6 9.4651 -4.2415 0.8463 17 6 9.8026 -4.2360 -0.4441 18 16 8.3487 -4.2417 -1.4340 19 1 -0.4849 0.8401 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6803 -0.8889 22 1 5.9693 -2.1237 0.0024 23 1 5.4646 -4.7562 -0.8878 24 1 5.4634 -4.7561 0.8921 25 1 7.6936 -4.2428 2.0924 26 1 10.1989 -4.2409 1.6387 27 1 10.8139 -4.2309 -0.8232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258685361.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -7.895518 kcal Electronic energy + Delta-G solvation = -12534.379035 eV Core-core repulsion = 10190.865613 eV Total energy + Delta-G solvation = -2343.513422 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.95578 -37.85431 -34.33990 -32.83244 -30.69323 -29.30808 -26.11099 -23.50891 -22.45429 -19.76566 -19.37086 -17.47861 -16.91363 -15.91171 -15.40236 -15.23268 -14.71194 -14.10431 -13.36447 -13.11361 -13.03896 -12.79974 -12.26584 -12.14167 -12.00121 -11.39072 -10.89327 -10.80055 -10.55341 -9.99078 -9.26200 -9.18040 -8.68245 -8.62214 -8.60365 -8.54629 -6.02390 -4.02099 0.76561 1.45772 1.84445 2.53597 3.27289 3.33865 3.35786 3.58116 3.93197 4.41504 4.60534 4.87262 5.19226 5.28296 5.38135 5.54837 5.69327 5.96619 6.08643 6.14947 6.31008 6.61806 6.88344 6.92350 7.54739 8.10942 8.56785 9.07657 9.18563 9.55948 11.10619 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048654 B = 0.005533 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.353459 B = 5059.068201 C = 5306.106418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.092 0.908 9 C -0.029 4.029 10 C 0.522 3.478 11 O -0.531 6.531 12 N -0.746 5.746 13 C 0.191 3.809 14 C -0.190 4.190 15 C -0.124 4.124 16 C -0.136 4.136 17 C -0.216 4.216 18 S 0.111 5.889 19 H 0.264 0.736 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.397 0.603 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.190 -6.121 -0.099 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.110 0.890 9 C -0.068 4.068 10 C 0.311 3.689 11 O -0.406 6.406 12 N -0.402 5.402 13 C 0.066 3.934 14 C -0.307 4.307 15 C -0.155 4.155 16 C -0.167 4.167 17 C -0.352 4.352 18 S 0.375 5.625 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.230 0.770 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.157 0.843 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 20.139 -6.693 -1.666 21.287 hybrid contribution 1.166 1.294 1.504 2.301 sum 21.304 -5.400 -0.163 21.979 Atomic orbital electron populations 1.69901 1.06175 1.26809 1.50711 1.24981 0.94808 0.98741 0.94791 0.86876 0.80306 0.84039 0.78560 1.20144 1.21133 1.19111 1.21006 0.87687 0.95723 1.50696 0.88963 1.19685 0.99620 0.88962 0.98572 1.21453 0.80111 0.93591 0.73714 1.90590 1.55075 1.46937 1.47976 1.46387 1.08120 1.06793 1.78906 1.19545 0.84959 0.85820 1.03106 1.24647 0.99544 1.10604 0.95937 1.20240 0.92869 1.02832 0.99585 1.20185 0.96165 1.03896 0.96467 1.25693 1.02093 1.10324 0.97055 1.84448 0.96436 1.72161 1.09486 0.92600 0.93540 0.93992 0.76980 0.90908 0.90014 0.83987 0.84275 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 15 7 C -0.51 -15.16 9.48 -34.44 -0.33 -15.48 15 8 H 0.09 3.09 7.00 -52.49 -0.37 2.72 15 9 C -0.03 -0.68 4.53 -29.04 -0.13 -0.81 15 10 C 0.52 11.55 7.82 -10.98 -0.09 11.46 15 11 O -0.53 -13.86 15.46 5.56 0.09 -13.78 15 12 N -0.75 -12.36 5.55 -61.47 -0.34 -12.70 15 13 C 0.19 2.76 6.16 -5.19 -0.03 2.73 15 14 C -0.19 -2.25 5.88 -36.00 -0.21 -2.46 15 15 C -0.12 -1.31 10.05 -41.21 -0.41 -1.72 15 16 C -0.14 -1.25 10.18 -41.21 -0.42 -1.67 15 17 C -0.22 -1.92 11.23 29.04 0.33 -1.60 15 18 S 0.11 1.17 23.33 -107.50 -2.51 -1.34 15 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 20 H 0.05 1.05 7.20 -51.93 -0.37 0.67 15 21 H 0.04 0.93 7.57 -51.93 -0.39 0.54 15 22 H 0.40 5.60 8.46 -40.82 -0.35 5.26 15 23 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.14 1.36 8.06 -52.49 -0.42 0.93 15 26 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 27 H 0.16 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 256.31 15.07 3.86 3.86 Total: -1.00 -33.63 256.31 -6.95 -40.58 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.76 Total: 1.96 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.39 Total: -7.65 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.43 Total: -39.98 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.63 -6.95 -40.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258685361.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.680 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds