Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48505 * 109.47061 * 269.99784 * 3 2 1 5 5 H 1.48506 * 109.47411 * 29.99723 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00226 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47151 * 180.02562 * 9 7 2 11 11 O 1.21280 * 120.00055 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00109 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99760 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.33381 * 125.20534 * 90.00074 * 14 13 12 16 16 C 1.38427 * 114.92374 * 180.02562 * 15 14 13 17 17 C 1.33387 * 114.91991 * 0.25034 * 16 15 14 18 18 S 1.75886 * 109.59194 * 359.63459 * 17 16 15 19 19 H 0.97003 * 119.99549 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47057 * 59.99634 * 9 7 2 21 21 H 1.09003 * 109.46751 * 300.00271 * 9 7 2 22 22 H 0.96998 * 119.99295 * 359.97438 * 12 10 9 23 23 H 1.09000 * 109.46999 * 60.00096 * 13 12 10 24 24 H 1.08995 * 109.47363 * 300.00014 * 13 12 10 25 25 H 1.08001 * 122.53741 * 0.05729 * 15 14 13 26 26 H 1.08002 * 122.53759 * 179.97438 * 16 15 14 27 27 H 1.08002 * 125.20431 * 179.75072 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2258 -3.5367 0.0010 12 7 5.3390 -2.8611 0.0020 13 6 5.8273 -4.2423 0.0024 14 6 7.3343 -4.2423 0.0029 15 6 8.1030 -4.2420 1.0930 16 6 9.4651 -4.2415 0.8463 17 6 9.8026 -4.2360 -0.4441 18 16 8.3487 -4.2417 -1.4340 19 1 -0.4849 0.8401 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6803 -0.8889 22 1 5.9693 -2.1237 0.0024 23 1 5.4646 -4.7562 -0.8878 24 1 5.4634 -4.7561 0.8921 25 1 7.6936 -4.2428 2.0924 26 1 10.1989 -4.2409 1.6387 27 1 10.8139 -4.2309 -0.8232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258685361.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -32.469455 kcal Electronic energy + Delta-G solvation = -12535.444641 eV Core-core repulsion = 10190.865613 eV Total energy + Delta-G solvation = -2344.579027 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56391 -38.78903 -35.76931 -35.00981 -32.25302 -30.85127 -27.27338 -25.10207 -23.69273 -21.41137 -20.18470 -19.04201 -18.55894 -17.24980 -16.96022 -16.44841 -16.18580 -15.91155 -14.90072 -14.63018 -14.14781 -13.89857 -13.62121 -13.41347 -13.20612 -12.78698 -12.72669 -12.37915 -11.86094 -11.66235 -11.53287 -10.79634 -10.74315 -10.09820 -9.69197 -9.42197 -8.25978 -6.34679 -0.03476 0.65815 1.08720 1.40320 1.44398 1.54939 1.76198 1.82704 2.38834 2.51601 3.07380 3.63355 4.16606 4.24348 4.30736 4.59938 4.68995 4.72975 4.75665 5.05842 5.19304 5.34325 5.43698 5.48397 5.55662 6.24527 6.64949 6.84306 7.25437 7.45300 8.91650 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048654 B = 0.005533 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.353459 B = 5059.068201 C = 5306.106418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.230 1.230 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.027 4.027 10 C 0.522 3.478 11 O -0.584 6.584 12 N -0.721 5.721 13 C 0.195 3.805 14 C -0.216 4.216 15 C -0.113 4.113 16 C -0.145 4.145 17 C -0.199 4.199 18 S 0.097 5.903 19 H 0.268 0.732 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.413 0.587 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.166 0.834 27 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.124 -4.566 0.216 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.152 1.152 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.067 4.067 10 C 0.311 3.689 11 O -0.463 6.463 12 N -0.375 5.375 13 C 0.070 3.930 14 C -0.333 4.333 15 C -0.145 4.145 16 C -0.175 4.175 17 C -0.335 4.335 18 S 0.360 5.640 19 H 0.077 0.923 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.249 0.751 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.168 0.832 26 H 0.184 0.816 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 24.149 -5.150 -1.353 24.729 hybrid contribution -0.024 0.686 1.411 1.569 sum 24.125 -4.464 0.058 24.534 Atomic orbital electron populations 1.70100 1.08804 1.28426 1.52074 1.26156 0.95805 1.03929 0.93662 0.85515 0.79795 0.76771 0.79579 1.18702 1.21127 1.15220 1.21186 0.91018 0.93749 1.51421 0.95288 1.19607 0.95782 0.90715 1.00604 1.21213 0.81564 0.92541 0.73609 1.90578 1.56926 1.48057 1.50781 1.46068 1.06377 1.08651 1.76441 1.19487 0.87146 0.84011 1.02390 1.24309 0.97904 1.13870 0.97223 1.20498 0.93647 1.00848 0.99539 1.20444 0.95853 1.03802 0.97356 1.26080 1.02487 1.08330 0.96598 1.84521 0.97473 1.72493 1.09498 0.92297 0.91056 0.91353 0.75077 0.92024 0.90541 0.83229 0.81625 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.71 13.96 21.45 0.30 -61.41 15 2 C 0.00 0.05 5.47 84.65 0.46 0.51 15 3 Si 0.96 42.36 27.47 68.60 1.88 44.25 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.23 -8.70 6.54 99.48 0.65 -8.05 15 7 C -0.54 -32.63 9.48 25.60 0.24 -32.38 15 8 H 0.03 2.08 7.00 -2.91 -0.02 2.06 15 9 C -0.03 -1.27 4.53 29.10 0.13 -1.13 15 10 C 0.52 23.16 7.82 87.66 0.69 23.85 15 11 O -0.58 -31.91 15.46 -3.03 -0.05 -31.95 15 12 N -0.72 -23.01 5.55 -466.79 -2.59 -25.60 15 13 C 0.19 5.53 6.16 85.63 0.53 6.06 15 14 C -0.22 -4.74 5.88 24.59 0.14 -4.60 15 15 C -0.11 -2.08 10.05 21.22 0.21 -1.86 15 16 C -0.14 -2.09 10.18 21.22 0.22 -1.87 15 17 C -0.20 -2.80 11.23 66.72 0.75 -2.05 15 18 S 0.10 1.83 23.33 -56.49 -1.32 0.51 15 19 H 0.27 15.96 8.31 -92.71 -0.77 15.19 15 20 H 0.07 2.97 7.20 -2.38 -0.02 2.95 15 21 H 0.07 2.83 7.57 -2.39 -0.02 2.81 15 22 H 0.41 10.57 8.46 -92.71 -0.78 9.78 15 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.08 2.25 8.14 -2.39 -0.02 2.24 15 25 H 0.15 2.47 8.06 -2.91 -0.02 2.44 15 26 H 0.17 1.52 8.06 -2.91 -0.02 1.50 15 27 H 0.19 1.57 8.06 -2.91 -0.02 1.54 15 Total: -1.00 -77.34 256.31 1.95 -75.39 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.34 Total: 12.29 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.37 Total: -13.48 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -2.29 Total: -87.01 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.25 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -77.34 1.95 -75.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258685361.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.920 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds