Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38472 * 122.62559 * 2 1 4 4 C 1.33310 * 114.98434 * 179.80461 * 3 2 1 5 5 S 1.75859 * 109.72206 * 0.44729 * 4 3 2 6 6 C 1.34090 * 122.62359 * 180.29665 * 2 1 3 7 7 N 1.39737 * 125.24178 * 359.95873 * 6 2 1 8 8 C 1.34778 * 120.00062 * 179.97438 * 7 6 2 9 9 O 1.21302 * 119.99923 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99465 * 179.97438 * 8 7 6 11 11 C 1.50708 * 109.46828 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00267 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99889 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00153 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47113 * 60.00184 * 15 13 11 17 17 H 1.48496 * 109.47165 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47249 * 300.00168 * 15 13 11 19 19 H 1.09001 * 109.46953 * 269.70222 * 1 2 3 20 20 H 1.09000 * 109.47318 * 29.69820 * 1 2 3 21 21 H 1.09000 * 109.47161 * 149.70451 * 1 2 3 22 22 H 1.08004 * 122.50902 * 0.03096 * 3 2 1 23 23 H 1.07996 * 125.13513 * 180.19045 * 4 3 2 24 24 H 0.97003 * 119.99875 * 359.97438 * 7 6 2 25 25 H 1.08998 * 109.47345 * 299.99433 * 10 8 7 26 26 H 1.08999 * 109.47068 * 60.00686 * 10 8 7 27 27 H 0.96994 * 120.00422 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2536 1.1662 0.0000 4 6 3.5749 0.9890 0.0041 5 16 3.9430 -0.7306 -0.0046 6 6 2.2300 -1.1293 -0.0058 7 7 1.7035 -2.4237 -0.0117 8 6 2.5307 -3.4877 -0.0178 9 8 3.7323 -3.3217 -0.0187 10 6 1.9628 -4.8836 -0.0236 11 6 3.0896 -5.8843 -0.0305 12 1 4.1144 -5.5435 -0.0302 13 6 2.8122 -7.2349 -0.0360 14 7 1.5643 -7.6498 -0.0358 15 14 4.2089 -8.4752 -0.0438 16 1 5.0458 -8.2859 1.1682 17 1 3.6494 -9.8507 -0.0496 18 1 5.0419 -8.2751 -1.2568 19 1 -0.3633 -0.0053 1.0277 20 1 -0.3634 0.8927 -0.5091 21 1 -0.3633 -0.8873 -0.5184 22 1 1.7995 2.1461 0.0005 23 1 4.3083 1.7817 0.0077 24 1 0.7426 -2.5564 -0.0114 25 1 1.3512 -5.0307 0.8666 26 1 1.3488 -5.0223 -0.9135 27 1 1.3690 -8.5999 -0.0400 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258758352.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = -36.136635 kcal Electronic energy + Delta-G solvation = -12832.913021 eV Core-core repulsion = 10488.174973 eV Total energy + Delta-G solvation = -2344.738048 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05308 -39.02610 -35.47913 -35.17123 -31.65926 -30.88782 -27.89322 -25.64653 -23.64325 -22.03155 -20.37058 -18.86632 -18.25018 -17.40022 -16.56754 -16.47499 -16.42337 -15.33384 -14.84368 -14.78158 -14.24624 -13.79354 -13.47651 -13.01647 -12.93568 -12.86137 -12.60903 -12.51204 -12.08878 -11.71732 -11.66171 -11.50409 -10.65573 -10.60543 -9.27646 -8.78461 -8.28949 -6.36713 0.12113 0.56073 1.30950 1.40236 1.42313 1.50952 1.53010 2.03937 2.10334 2.42849 3.07203 4.15497 4.17376 4.38678 4.46037 4.72507 4.87967 4.96438 5.12951 5.15569 5.19761 5.22275 5.52016 5.68071 5.72058 5.94221 6.39303 6.75147 7.11558 7.33206 8.82931 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.006559 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.570372 B = 4267.699412 C = 4779.821951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.166 4.166 3 C -0.111 4.111 4 C -0.263 4.263 5 S 0.131 5.869 6 C 0.018 3.982 7 N -0.634 5.634 8 C 0.509 3.491 9 O -0.542 6.542 10 C 0.016 3.984 11 C -0.540 4.540 12 H 0.058 0.942 13 C 0.013 3.987 14 N -0.922 5.922 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.273 1.273 19 H 0.076 0.924 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.168 0.832 23 H 0.186 0.814 24 H 0.426 0.574 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 15.905 0.082 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.182 4.182 3 C -0.141 4.141 4 C -0.399 4.399 5 S 0.392 5.608 6 C -0.195 4.195 7 N -0.281 5.281 8 C 0.299 3.701 9 O -0.419 6.419 10 C -0.023 4.023 11 C -0.578 4.578 12 H 0.076 0.924 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.198 1.198 19 H 0.094 0.906 20 H 0.107 0.893 21 H 0.079 0.921 22 H 0.186 0.814 23 H 0.203 0.797 24 H 0.267 0.733 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.853 14.921 0.074 14.945 hybrid contribution -1.081 -0.207 -0.002 1.101 sum -1.934 14.713 0.073 14.840 Atomic orbital electron populations 1.20459 0.87700 1.03510 1.02896 1.19069 0.98822 0.90120 1.10166 1.19998 0.92463 0.99189 1.02451 1.26225 1.00886 1.00363 1.12404 1.85552 1.02262 0.99243 1.73770 1.22286 0.98151 0.88506 1.10600 1.43190 1.11287 1.01769 1.71854 1.22031 0.86669 0.88062 0.73366 1.90481 1.16744 1.85565 1.49114 1.19059 0.97729 0.85985 0.99566 1.21294 0.93407 0.91281 1.51811 0.92373 1.25752 0.98384 1.00132 0.94313 1.70005 1.19288 1.16141 1.50743 0.85505 0.79045 0.77625 0.78908 1.19770 1.19899 1.19780 0.90563 0.89262 0.92104 0.81432 0.79687 0.73346 0.93167 0.93176 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.87 71.24 0.70 -0.94 15 2 C -0.17 -4.37 5.83 -20.75 -0.12 -4.49 15 3 C -0.11 -2.54 9.98 21.21 0.21 -2.33 15 4 C -0.26 -6.55 11.21 66.71 0.75 -5.80 15 5 S 0.13 4.53 20.46 -56.49 -1.16 3.37 15 6 C 0.02 0.60 7.11 82.49 0.59 1.19 15 7 N -0.63 -22.63 5.39 -306.32 -1.65 -24.27 15 8 C 0.51 23.17 7.79 87.66 0.68 23.85 15 9 O -0.54 -27.78 12.99 -3.10 -0.04 -27.82 15 10 C 0.02 0.80 5.46 29.10 0.16 0.96 15 11 C -0.54 -31.14 8.92 25.60 0.23 -30.91 15 12 H 0.06 3.51 6.75 -2.91 -0.02 3.49 15 13 C 0.01 0.75 5.46 84.65 0.46 1.22 15 14 N -0.92 -52.97 13.29 21.45 0.28 -52.68 15 15 Si 0.96 44.74 29.54 68.60 2.03 46.77 15 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.09 1.29 8.13 -2.39 -0.02 1.27 15 21 H 0.06 1.13 7.11 -2.39 -0.02 1.12 15 22 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 23 H 0.19 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.43 12.32 7.48 -92.71 -0.69 11.62 15 25 H 0.05 2.52 8.14 -2.39 -0.02 2.51 15 26 H 0.05 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 Total: -1.00 -66.82 252.94 3.62 -63.20 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.50 Total: 8.69 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.66 Total: -17.25 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.36 Total: -76.96 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.04 Total: -27.82 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.16 Total: 3.37 kcal Total: -66.82 3.62 -63.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258758352.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.065 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds