Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31466 * 1 3 3 Si 1.86797 * 119.99890 * 2 1 4 4 H 1.48498 * 109.47403 * 239.99949 * 3 2 1 5 5 H 1.48505 * 109.47294 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47126 * 120.00020 * 3 2 1 7 7 C 1.38887 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00151 * 180.02562 * 7 2 1 9 9 N 1.37173 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99809 * 180.02562 * 9 7 2 11 11 O 1.21512 * 120.00143 * 359.97438 * 10 9 7 12 12 O 1.34706 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.35917 * 116.99642 * 185.95525 * 12 10 9 14 14 C 1.38775 * 120.03999 * 249.72639 * 13 12 10 15 15 C 1.38139 * 119.99350 * 179.69853 * 14 13 12 16 16 C 1.38249 * 120.07685 * 0.58292 * 15 14 13 17 17 C 1.38475 * 120.09081 * 359.71259 * 16 15 14 18 18 F 1.35095 * 120.00442 * 179.97438 * 17 16 15 19 19 C 1.38393 * 119.99997 * 359.97438 * 17 16 15 20 20 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00409 * 0.02562 * 9 7 2 22 22 H 1.08002 * 120.00146 * 359.97438 * 14 13 12 23 23 H 1.07999 * 119.95626 * 180.27274 * 15 14 13 24 24 H 1.08001 * 119.95458 * 179.74717 * 16 15 14 25 25 H 1.07999 * 120.03751 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 3.1024 1.6965 -1.2125 5 1 1.2836 2.7465 0.0006 6 1 3.1024 1.6964 1.2126 7 6 2.0091 -1.2028 -0.0005 8 1 3.0890 -1.2028 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5580 -0.0005 11 8 3.2123 -3.5580 -0.0010 12 8 1.3236 -4.7245 -0.0011 13 6 2.0582 -5.8612 0.1246 14 6 2.1872 -6.7276 -0.9517 15 6 2.9391 -7.8794 -0.8248 16 6 3.5539 -8.1765 0.3773 17 6 3.4224 -7.3174 1.4553 18 9 4.0235 -7.6098 2.6293 19 6 2.6752 -6.1593 1.3301 20 1 -0.4850 0.8401 0.0004 21 1 0.3532 -2.3908 -0.0005 22 1 1.7033 -6.4991 -1.8899 23 1 3.0427 -8.5510 -1.6642 24 1 4.1380 -9.0796 0.4755 25 1 2.5726 -5.4886 2.1704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258975595.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -111.980598 kcal Electronic energy + Delta-G solvation = -14583.321087 eV Core-core repulsion = 11669.081022 eV Total energy + Delta-G solvation = -2914.240065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.00894 -42.06184 -39.63024 -37.78264 -36.14453 -33.50894 -31.81723 -31.07902 -27.39846 -24.61712 -23.79966 -22.27403 -20.49189 -19.26876 -18.98911 -18.03273 -17.37126 -17.08513 -16.69444 -16.45158 -16.31454 -15.55430 -15.01309 -14.76784 -14.52545 -13.60266 -13.40853 -13.07653 -12.93149 -12.62690 -12.52483 -12.12627 -12.08665 -11.67998 -11.45367 -10.25385 -10.04616 -9.73645 -8.55805 -6.11334 -0.12795 0.07492 1.38239 1.39913 1.50386 1.67297 1.90845 2.33856 2.60651 3.08545 3.15508 3.71495 3.76553 3.94854 4.03261 4.25862 4.53605 4.91896 4.99884 5.18961 5.20428 5.29128 5.46569 5.82562 5.91949 6.33840 6.92874 7.23994 7.87672 8.62159 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.052561 B = 0.006012 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.583080 B = 4656.036751 C = 4876.496467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 1.008 2.992 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.091 0.909 9 N -0.537 5.537 10 C 0.579 3.421 11 O -0.627 6.627 12 O -0.319 6.319 13 C 0.114 3.886 14 C -0.136 4.136 15 C -0.060 4.060 16 C -0.145 4.145 17 C 0.099 3.901 18 F -0.142 7.142 19 C -0.185 4.185 20 H 0.283 0.717 21 H 0.403 0.597 22 H 0.152 0.848 23 H 0.190 0.810 24 H 0.177 0.823 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -13.204 -1.478 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.109 0.891 9 N -0.181 5.181 10 C 0.332 3.668 11 O -0.522 6.522 12 O -0.232 6.232 13 C 0.071 3.929 14 C -0.154 4.154 15 C -0.077 4.077 16 C -0.163 4.163 17 C 0.080 3.920 18 F -0.120 7.120 19 C -0.205 4.205 20 H 0.092 0.908 21 H 0.238 0.762 22 H 0.170 0.830 23 H 0.207 0.793 24 H 0.195 0.805 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.151 -13.088 -1.444 13.539 hybrid contribution -0.259 1.036 0.600 1.225 sum 2.892 -12.052 -0.844 12.423 Atomic orbital electron populations 1.69725 1.07085 1.30040 1.48771 1.26221 0.96709 1.02563 0.95325 0.84787 0.77608 0.75370 0.79313 1.19116 1.19204 1.19354 1.19709 0.92843 0.81654 1.52106 0.89076 1.40587 1.09609 1.01246 1.66657 1.18239 0.84176 0.80980 0.83371 1.90802 1.13324 1.86524 1.61572 1.84213 1.39059 1.12862 1.87024 1.18487 0.95115 0.85478 0.93826 1.21577 1.00396 0.95978 0.97478 1.21369 0.92971 0.95271 0.98100 1.21617 1.02415 1.00772 0.91527 1.17583 0.96241 0.95186 0.83034 1.91481 1.81458 1.93156 1.45941 1.21338 1.01278 0.98799 0.99068 0.90751 0.76194 0.83001 0.79250 0.80530 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.26 13.05 21.66 0.28 -48.98 15 2 C -0.01 -0.39 5.50 84.90 0.47 0.07 15 3 Si 1.01 41.73 29.55 68.60 2.03 43.76 15 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.34 -19.04 9.68 84.01 0.81 -18.22 15 8 H 0.09 5.37 7.16 -2.91 -0.02 5.35 15 9 N -0.54 -29.16 5.29 -432.91 -2.29 -31.45 15 10 C 0.58 30.37 8.49 129.79 1.10 31.47 15 11 O -0.63 -36.09 15.41 19.80 0.31 -35.78 15 12 O -0.32 -14.28 10.09 0.21 0.00 -14.27 15 13 C 0.11 4.33 5.25 22.50 0.12 4.45 15 14 C -0.14 -3.86 9.99 22.37 0.22 -3.63 15 15 C -0.06 -1.19 10.04 22.25 0.22 -0.97 15 16 C -0.14 -3.13 10.02 22.33 0.22 -2.91 15 17 C 0.10 2.97 7.30 22.36 0.16 3.14 15 18 F -0.14 -4.26 17.27 44.97 0.78 -3.49 15 19 C -0.19 -6.86 9.37 22.41 0.21 -6.65 15 20 H 0.28 14.10 8.31 -92.71 -0.77 13.33 15 21 H 0.40 21.19 8.01 -92.71 -0.74 20.45 15 22 H 0.15 3.76 8.06 -2.91 -0.02 3.73 15 23 H 0.19 1.91 8.06 -2.91 -0.02 1.89 15 24 H 0.18 2.41 8.06 -2.91 -0.02 2.38 15 25 H 0.12 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -66.85 243.32 5.14 -61.71 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.49 Total: 21.75 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 3.54 Total: 6.75 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.01 Total: -80.43 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: 0.31 Total: -50.05 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -66.85 5.14 -61.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258975595.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.273 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds