Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29475 * 124.68175 * 2 1 4 4 C 1.30768 * 117.51460 * 180.02562 * 3 2 1 5 5 C 1.37188 * 113.86088 * 359.97438 * 4 3 2 6 6 C 1.41386 * 126.19757 * 179.97438 * 5 4 3 7 7 O 1.21423 * 119.99964 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 S 1.70919 * 124.68167 * 180.33903 * 2 1 3 19 19 H 1.09004 * 109.47269 * 89.97504 * 1 2 3 20 20 H 1.08999 * 109.47017 * 209.97358 * 1 2 3 21 21 H 1.09000 * 109.47241 * 329.97879 * 1 2 3 22 22 H 1.08009 * 123.06670 * 180.02562 * 4 3 2 23 23 H 1.09002 * 109.47152 * 60.00243 * 8 6 5 24 24 H 1.09001 * 109.46980 * 300.00344 * 8 6 5 25 25 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 26 26 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0647 0.0000 4 6 3.5412 0.9016 -0.0005 5 6 3.9352 -0.4125 -0.0004 6 6 5.2680 -0.8846 -0.0014 7 8 6.1913 -0.0960 -0.0020 8 6 5.5425 -2.3664 -0.0018 9 6 7.0538 -2.6050 -0.0022 10 6 7.3283 -4.0868 -0.0019 11 1 6.5070 -4.7881 -0.0019 12 6 8.6280 -4.5472 -0.0028 13 7 8.8675 -5.8403 -0.0020 14 14 10.0485 -3.3341 -0.0036 15 1 10.4257 -3.0127 1.3963 16 1 11.2119 -3.9347 -0.7043 17 1 9.6371 -2.0905 -0.7033 18 16 2.4795 -1.4055 -0.0083 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8898 0.5142 22 1 4.2388 1.7261 -0.0002 23 1 5.1029 -2.8171 -0.8915 24 1 5.1040 -2.8173 0.8885 25 1 7.4926 -2.1540 -0.8923 26 1 7.4931 -2.1543 0.8876 27 1 9.7819 -6.1641 -0.0030 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259595895.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -5.944359 kcal Electronic energy + Delta-G solvation = -12563.566626 eV Core-core repulsion = 10220.137813 eV Total energy + Delta-G solvation = -2343.428813 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.11832 -38.65952 -33.56740 -32.50914 -31.40117 -29.27915 -26.36190 -24.36857 -22.21834 -20.09729 -19.04675 -17.94483 -16.80089 -15.98423 -15.46345 -14.75855 -14.58321 -14.13049 -14.02015 -13.53232 -12.96602 -12.70535 -12.56282 -12.40482 -11.60563 -11.43066 -11.00965 -10.31332 -10.13489 -10.00636 -9.79518 -9.54567 -9.25472 -9.18884 -8.94462 -8.53719 -6.05519 -4.04582 0.02285 1.12318 1.55086 2.26531 3.07271 3.35192 3.42032 3.51473 3.89066 4.47910 4.51693 4.75699 5.10294 5.11919 5.15292 5.29535 5.53652 5.74073 5.97608 6.00633 6.07892 6.68194 7.27223 7.36039 7.48098 7.70679 7.86549 8.49396 8.97075 9.57213 11.07302 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058633 B = 0.005981 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.433033 B = 4679.991297 C = 5131.672319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.041 3.959 3 N -0.487 5.487 4 C 0.119 3.881 5 C -0.319 4.319 6 C 0.418 3.582 7 O -0.447 6.447 8 C -0.151 4.151 9 C -0.003 4.003 10 C -0.526 4.526 11 H 0.073 0.927 12 C 0.069 3.931 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.262 1.262 18 S 0.205 5.795 19 H 0.089 0.911 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.187 0.813 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 10.167 -0.053 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.232 4.232 3 N -0.202 5.202 4 C -0.040 4.040 5 C -0.442 4.442 6 C 0.295 3.705 7 O -0.324 6.324 8 C -0.188 4.188 9 C -0.040 4.040 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 S 0.462 5.538 19 H 0.108 0.892 20 H 0.103 0.897 21 H 0.109 0.891 22 H 0.204 0.796 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.701 9.834 -0.064 19.381 hybrid contribution 1.407 1.189 0.023 1.842 sum -15.294 11.024 -0.041 18.853 Atomic orbital electron populations 1.20516 0.84925 1.04499 1.04154 1.27594 1.02357 0.92049 1.01181 1.66098 1.05192 1.31549 1.17362 1.22698 0.90644 0.95655 0.94995 1.25842 1.01124 0.97623 1.19580 1.20665 0.84857 0.93310 0.71620 1.90555 1.46039 1.59363 1.36413 1.22049 1.02797 0.90408 1.03562 1.19404 0.89368 0.97700 0.97558 1.21097 0.93712 0.90078 1.51456 0.90871 1.24982 0.98912 0.95035 0.94305 1.69909 1.20506 1.12774 1.50925 0.86804 0.81909 0.82136 0.78764 1.20194 1.21356 1.18591 1.84037 0.95902 1.10022 1.63852 0.89228 0.89734 0.89102 0.79638 0.89031 0.89042 0.95832 0.96278 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.00 0.38 -0.15 15 2 C 0.04 0.45 7.37 -13.27 -0.10 0.35 15 3 N -0.49 -6.46 10.49 -11.17 -0.12 -6.58 15 4 C 0.12 1.68 11.10 -18.39 -0.20 1.48 15 5 C -0.32 -4.82 6.29 -38.77 -0.24 -5.06 15 6 C 0.42 7.68 6.94 -33.11 -0.23 7.45 15 7 O -0.45 -9.46 16.41 5.43 0.09 -9.37 15 8 C -0.15 -2.95 4.99 -27.88 -0.14 -3.09 15 9 C 0.00 -0.07 3.33 -27.88 -0.09 -0.16 15 10 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 15 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 15 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 13 N -0.90 -27.91 13.96 55.43 0.77 -27.14 15 14 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 15 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 17 H -0.26 -6.62 6.54 56.52 0.37 -6.25 15 18 S 0.20 2.37 22.56 -107.50 -2.43 -0.06 15 19 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 15 21 H 0.09 0.56 8.14 -51.93 -0.42 0.13 15 22 H 0.19 2.43 8.04 -52.48 -0.42 2.01 15 23 H 0.09 1.68 8.14 -51.93 -0.42 1.25 15 24 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 25 H 0.02 0.60 7.16 -51.93 -0.37 0.23 15 26 H 0.02 0.48 7.53 -51.93 -0.39 0.09 15 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 15 LS Contribution 256.98 15.07 3.87 3.87 Total: -1.00 -33.26 256.98 -6.42 -39.68 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -2.88 Total: -5.57 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.06 Total: -12.61 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.66 Total: -33.71 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.43 Total: -0.06 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.26 -6.42 -39.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595895.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.734 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds