Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29475 * 124.68175 * 2 1 4 4 C 1.30768 * 117.51460 * 180.02562 * 3 2 1 5 5 C 1.37188 * 113.86088 * 359.97438 * 4 3 2 6 6 C 1.41386 * 126.19757 * 179.97438 * 5 4 3 7 7 O 1.21423 * 119.99964 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 S 1.70919 * 124.68167 * 180.33903 * 2 1 3 19 19 H 1.09004 * 109.47269 * 89.97504 * 1 2 3 20 20 H 1.08999 * 109.47017 * 209.97358 * 1 2 3 21 21 H 1.09000 * 109.47241 * 329.97879 * 1 2 3 22 22 H 1.08009 * 123.06670 * 180.02562 * 4 3 2 23 23 H 1.09002 * 109.47152 * 60.00243 * 8 6 5 24 24 H 1.09001 * 109.46980 * 300.00344 * 8 6 5 25 25 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 26 26 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0647 0.0000 4 6 3.5412 0.9016 -0.0005 5 6 3.9352 -0.4125 -0.0004 6 6 5.2680 -0.8846 -0.0014 7 8 6.1913 -0.0960 -0.0020 8 6 5.5425 -2.3664 -0.0018 9 6 7.0538 -2.6050 -0.0022 10 6 7.3283 -4.0868 -0.0019 11 1 6.5070 -4.7881 -0.0019 12 6 8.6280 -4.5472 -0.0028 13 7 8.8675 -5.8403 -0.0020 14 14 10.0485 -3.3341 -0.0036 15 1 10.4257 -3.0127 1.3963 16 1 11.2119 -3.9347 -0.7043 17 1 9.6371 -2.0905 -0.7033 18 16 2.4795 -1.4055 -0.0083 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8898 0.5142 22 1 4.2388 1.7261 -0.0002 23 1 5.1029 -2.8171 -0.8915 24 1 5.1040 -2.8173 0.8885 25 1 7.4926 -2.1540 -0.8923 26 1 7.4931 -2.1543 0.8876 27 1 9.7819 -6.1641 -0.0030 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595895.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -28.241480 kcal Electronic energy + Delta-G solvation = -12564.533502 eV Core-core repulsion = 10220.137813 eV Total energy + Delta-G solvation = -2344.395689 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27378 -39.96385 -35.61386 -33.63986 -33.14156 -30.43455 -28.04412 -25.44611 -23.77054 -21.71216 -20.18803 -19.33926 -18.58924 -17.30336 -16.74072 -16.29930 -15.96528 -15.74199 -15.25214 -14.73443 -14.41951 -14.36600 -13.47325 -13.37401 -13.21170 -12.94122 -12.60168 -12.21160 -12.02350 -11.80803 -11.45029 -11.07497 -10.80419 -10.60477 -10.56298 -9.91320 -8.33217 -6.36743 -1.02775 0.16905 0.56719 1.11085 1.32229 1.34196 1.48371 1.87029 2.33278 3.00104 3.02149 3.21822 3.91621 4.05057 4.19935 4.38249 4.53421 4.62509 4.68330 4.90117 5.00423 5.16919 5.27326 5.37376 5.57747 6.20605 6.43083 6.50212 6.70773 7.28608 8.82445 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058633 B = 0.005981 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.433033 B = 4679.991297 C = 5131.672319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.061 3.939 3 N -0.511 5.511 4 C 0.133 3.867 5 C -0.363 4.363 6 C 0.430 3.570 7 O -0.488 6.488 8 C -0.147 4.147 9 C 0.000 4.000 10 C -0.531 4.531 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.259 1.259 18 S 0.240 5.760 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.100 0.900 22 H 0.188 0.812 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 11.187 -0.040 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.211 4.211 3 N -0.227 5.227 4 C -0.028 4.028 5 C -0.485 4.485 6 C 0.310 3.690 7 O -0.368 6.368 8 C -0.184 4.184 9 C -0.037 4.037 10 C -0.569 4.569 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.583 5.583 14 Si 0.762 3.238 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.184 1.184 18 S 0.498 5.502 19 H 0.129 0.871 20 H 0.128 0.872 21 H 0.118 0.882 22 H 0.205 0.795 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.569 10.833 -0.050 21.498 hybrid contribution 1.762 0.829 0.016 1.948 sum -16.807 11.661 -0.034 20.456 Atomic orbital electron populations 1.20832 0.81553 1.06189 1.05923 1.28459 1.04136 0.91214 0.97261 1.66224 1.04747 1.32447 1.19235 1.22836 0.91336 0.95481 0.93115 1.25448 1.00756 0.98960 1.23334 1.20458 0.86051 0.92078 0.70393 1.90536 1.47525 1.59738 1.39022 1.21945 0.99308 0.92295 1.04892 1.19276 0.93068 0.94833 0.96566 1.21412 0.93172 0.91759 1.50588 0.93237 1.25826 1.01764 0.96678 0.94171 1.70023 1.21393 1.14569 1.52320 0.85829 0.78870 0.79823 0.79231 1.19263 1.20291 1.18370 1.83889 0.93799 1.09253 1.63228 0.87126 0.87236 0.88189 0.79500 0.87782 0.87755 0.96869 0.96990 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.46 71.23 0.74 -0.01 15 2 C 0.06 1.14 7.37 88.45 0.65 1.79 15 3 N -0.51 -12.42 10.49 -189.25 -1.99 -14.40 15 4 C 0.13 3.61 11.10 84.60 0.94 4.55 15 5 C -0.36 -10.56 6.29 22.80 0.14 -10.41 15 6 C 0.43 15.68 6.94 26.46 0.18 15.87 15 7 O -0.49 -20.89 16.41 -3.47 -0.06 -20.95 15 8 C -0.15 -5.72 4.99 29.85 0.15 -5.57 15 9 C 0.00 0.00 3.33 29.85 0.10 0.10 15 10 C -0.53 -30.80 9.66 25.60 0.25 -30.56 15 11 H 0.05 3.02 7.99 -2.91 -0.02 3.00 15 12 C 0.01 0.80 5.47 84.65 0.46 1.26 15 13 N -0.94 -59.04 13.96 21.45 0.30 -58.74 15 14 Si 0.94 46.49 27.47 68.60 1.88 48.37 15 15 H -0.27 -12.80 7.11 99.48 0.71 -12.10 15 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 17 H -0.26 -12.68 6.54 99.48 0.65 -12.03 15 18 S 0.24 4.97 22.56 -56.49 -1.27 3.69 15 19 H 0.11 0.65 8.14 -2.39 -0.02 0.63 15 20 H 0.11 0.49 8.14 -2.39 -0.02 0.47 15 21 H 0.10 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.19 4.83 8.04 -2.91 -0.02 4.80 15 23 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 24 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 25 H 0.01 0.67 7.16 -2.39 -0.02 0.65 15 26 H 0.01 0.60 7.53 -2.39 -0.02 0.58 15 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 Total: -1.00 -71.96 256.98 3.60 -68.35 By element: Atomic # 1 Polarization: -4.46 SS G_CDS: 1.12 Total: -3.34 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.62 Total: -22.98 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.69 Total: -73.15 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.88 Total: 48.37 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.27 Total: 3.69 kcal Total: -71.96 3.60 -68.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595895.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.111 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds