Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48504 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47304 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.47096 * 59.99726 * 3 2 1 7 7 C 1.37875 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99945 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47415 * 179.97438 * 9 7 2 11 11 C 1.36468 * 126.44265 * 90.01968 * 10 9 7 12 12 S 1.76207 * 125.74649 * 0.09977 * 11 10 9 13 13 N 1.31023 * 108.51145 * 180.35991 * 11 10 9 14 14 C 1.34687 * 109.27510 * 359.67410 * 13 11 10 15 15 C 1.34894 * 108.53726 * 0.13217 * 14 13 11 16 16 N 1.40192 * 111.89440 * 180.43011 * 15 14 13 17 17 C 1.48057 * 107.53757 * 341.99782 * 16 15 14 18 18 C 1.51620 * 143.07361 * 179.67095 * 14 13 11 19 19 H 0.97001 * 120.00282 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46972 * 59.99238 * 9 7 2 21 21 H 1.09005 * 109.47053 * 299.99582 * 9 7 2 22 22 H 1.34505 * 102.99714 * 89.99775 * 12 11 10 23 23 H 1.00897 * 111.00191 * 103.59500 * 16 15 14 24 24 H 1.08996 * 110.91233 * 268.20862 * 17 16 15 25 25 H 1.09004 * 110.91145 * 144.58804 * 17 16 15 26 26 H 1.08997 * 110.75718 * 314.47590 * 18 14 13 27 27 H 1.08999 * 110.76072 * 77.66840 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7295 -4.2291 1.0984 12 16 2.3769 -3.8214 2.7760 13 7 3.5456 -5.1714 0.6950 14 6 3.5649 -5.1965 -0.6515 15 6 2.7358 -4.2364 -1.1103 16 7 2.6949 -4.2067 -2.5113 17 6 3.8865 -4.9315 -3.0079 18 6 4.1827 -5.9038 -1.8419 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 1.3214 -4.6044 3.0622 23 1 1.8456 -4.6273 -2.8572 24 1 4.7204 -4.2475 -3.1654 25 1 3.6561 -5.4789 -3.9219 26 1 5.2570 -6.0256 -1.7039 27 1 3.7043 -6.8688 -2.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259608351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 86.984825 kcal Electronic energy + Delta-G solvation = -13325.857643 eV Core-core repulsion = 11018.751293 eV Total energy + Delta-G solvation = -2307.106350 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.60071 -37.10145 -33.99777 -32.11428 -29.16435 -27.75912 -26.94096 -23.26340 -22.51112 -20.14744 -19.62584 -17.31549 -16.79297 -16.62876 -15.21609 -14.78521 -14.63658 -14.29505 -13.79803 -13.34008 -12.49815 -12.31430 -11.90554 -11.74562 -11.33764 -11.03286 -10.88691 -10.64777 -10.28354 -9.92196 -9.78659 -9.11736 -8.63347 -8.50705 -7.72867 -7.27780 -6.26382 -4.31999 1.68996 2.27326 3.00145 3.16305 3.23196 3.30604 3.37894 3.62286 4.28957 4.51006 4.77955 5.05424 5.10940 5.21804 5.68388 5.78183 6.02757 6.06589 6.36114 6.47745 6.88992 7.12143 7.25418 7.43388 7.66490 7.84639 7.90338 8.43894 8.72163 9.34113 10.82929 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.010431 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.007536 B = 2683.652371 C = 3425.199180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.229 3.771 10 N -0.385 5.385 11 C 0.171 3.829 12 S 0.016 5.984 13 N -0.431 5.431 14 C -0.083 4.083 15 C 0.175 3.825 16 N -0.602 5.602 17 C 0.069 3.931 18 C -0.057 4.057 19 H 0.267 0.733 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.350 0.650 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -8.529 -2.926 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.068 5.068 11 C -0.198 4.198 12 S 0.169 5.831 13 N -0.152 5.152 14 C -0.221 4.221 15 C -0.045 4.045 16 N -0.233 5.233 17 C -0.060 4.060 18 C -0.097 4.097 19 H 0.077 0.923 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.017 0.983 23 H 0.174 0.826 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.003 -7.729 -1.585 8.847 hybrid contribution -1.021 -0.096 -1.199 1.578 sum 2.983 -7.825 -2.784 8.825 Atomic orbital electron populations 1.69922 1.06089 1.27564 1.49502 1.24888 0.94942 0.99458 0.94268 0.86278 0.80134 0.82403 0.77770 1.19477 1.20741 1.20538 1.21170 0.93620 0.89132 1.52538 0.91644 1.19944 0.87116 0.81991 0.99880 1.46211 1.32805 1.25348 1.02462 1.23669 1.04035 0.99713 0.92346 1.85760 1.41311 1.55333 1.00723 1.70065 1.16983 1.18424 1.09752 1.21738 1.07337 1.01547 0.91502 1.19574 1.01794 0.95756 0.87328 1.57702 1.06269 1.57065 1.02297 1.23071 0.92430 0.94135 0.96347 1.20998 1.01315 0.97637 0.89732 0.92346 0.93351 0.92609 0.98322 0.82607 0.89234 0.89353 0.89969 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.29 55.43 0.74 -24.37 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 15 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 15 9 C 0.23 5.83 5.73 -5.19 -0.03 5.80 15 10 N -0.39 -9.00 2.80 -116.95 -0.33 -9.33 15 11 C 0.17 3.82 8.23 -88.62 -0.73 3.09 15 12 S 0.02 0.30 25.58 -107.50 -2.75 -2.45 15 13 N -0.43 -9.49 11.29 -9.17 -0.10 -9.59 15 14 C -0.08 -1.66 8.09 -82.07 -0.66 -2.32 15 15 C 0.18 3.69 8.25 -150.28 -1.24 2.45 15 16 N -0.60 -10.32 7.23 -57.78 -0.42 -10.73 15 17 C 0.07 0.88 7.86 -2.30 -0.02 0.86 15 18 C -0.06 -0.80 7.05 -26.55 -0.19 -0.99 15 19 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 20 H 0.05 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.06 1.45 7.73 -51.93 -0.40 1.05 15 22 H 0.05 0.90 9.07 97.61 0.89 1.78 15 23 H 0.35 5.15 8.86 -39.29 -0.35 4.80 15 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 LS Contribution 253.60 15.07 3.82 3.82 Total: -1.00 -30.96 253.60 -8.87 -39.83 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -1.52 Total: 0.76 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.29 Total: -4.22 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.11 Total: -54.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.75 Total: -2.45 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.96 -8.87 -39.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.819 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds