Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48504 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47304 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.47096 * 59.99726 * 3 2 1 7 7 C 1.37875 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99945 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47415 * 179.97438 * 9 7 2 11 11 C 1.36468 * 126.44265 * 90.01968 * 10 9 7 12 12 S 1.76207 * 125.74649 * 0.09977 * 11 10 9 13 13 N 1.31023 * 108.51145 * 180.35991 * 11 10 9 14 14 C 1.34687 * 109.27510 * 359.67410 * 13 11 10 15 15 C 1.34894 * 108.53726 * 0.13217 * 14 13 11 16 16 N 1.40192 * 111.89440 * 180.43011 * 15 14 13 17 17 C 1.48057 * 107.53757 * 341.99782 * 16 15 14 18 18 C 1.51620 * 143.07361 * 179.67095 * 14 13 11 19 19 H 0.97001 * 120.00282 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46972 * 59.99238 * 9 7 2 21 21 H 1.09005 * 109.47053 * 299.99582 * 9 7 2 22 22 H 1.34505 * 102.99714 * 89.99775 * 12 11 10 23 23 H 1.00897 * 111.00191 * 103.59500 * 16 15 14 24 24 H 1.08996 * 110.91233 * 268.20862 * 17 16 15 25 25 H 1.09004 * 110.91145 * 144.58804 * 17 16 15 26 26 H 1.08997 * 110.75718 * 314.47590 * 18 14 13 27 27 H 1.08999 * 110.76072 * 77.66840 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7295 -4.2291 1.0984 12 16 2.3769 -3.8214 2.7760 13 7 3.5456 -5.1714 0.6950 14 6 3.5649 -5.1965 -0.6515 15 6 2.7358 -4.2364 -1.1103 16 7 2.6949 -4.2067 -2.5113 17 6 3.8865 -4.9315 -3.0079 18 6 4.1827 -5.9038 -1.8419 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 1.3214 -4.6044 3.0622 23 1 1.8456 -4.6273 -2.8572 24 1 4.7204 -4.2475 -3.1654 25 1 3.6561 -5.4789 -3.9219 26 1 5.2570 -6.0256 -1.7039 27 1 3.7043 -6.8688 -2.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259608351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 66.753719 kcal Electronic energy + Delta-G solvation = -13326.734929 eV Core-core repulsion = 11018.751293 eV Total energy + Delta-G solvation = -2307.983637 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16164 -38.45332 -35.91533 -34.02251 -30.51269 -29.35720 -28.68189 -25.25323 -23.82044 -21.62261 -21.18714 -19.05701 -18.58217 -18.30042 -16.86669 -16.38193 -16.06820 -15.97204 -15.27487 -14.70645 -14.35659 -13.80848 -13.61669 -13.30065 -12.92373 -12.73811 -12.43727 -12.29728 -12.11565 -11.79655 -11.30389 -10.76504 -10.65490 -10.20536 -9.27671 -8.73811 -8.35740 -6.49634 0.14444 0.64818 1.37994 1.39584 1.50702 1.51922 1.64428 2.05921 2.34919 2.95937 2.98948 3.49134 3.94114 4.23773 4.39876 4.58044 4.61852 4.79002 4.84811 5.07514 5.20690 5.47780 5.53708 5.73051 5.77238 6.09143 6.29217 6.57277 6.83654 7.20774 8.73693 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.010431 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.007536 B = 2683.652371 C = 3425.199180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.046 0.954 9 C 0.248 3.752 10 N -0.406 5.406 11 C 0.146 3.854 12 S 0.013 5.987 13 N -0.446 5.446 14 C -0.092 4.092 15 C 0.155 3.845 16 N -0.616 5.616 17 C 0.074 3.926 18 C -0.050 4.050 19 H 0.273 0.727 20 H 0.031 0.969 21 H 0.044 0.956 22 H 0.073 0.927 23 H 0.362 0.638 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.097 0.903 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -8.858 -4.078 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.064 0.936 9 C 0.128 3.872 10 N -0.090 5.090 11 C -0.221 4.221 12 S 0.166 5.834 13 N -0.168 5.168 14 C -0.231 4.231 15 C -0.064 4.064 16 N -0.250 5.250 17 C -0.054 4.054 18 C -0.090 4.090 19 H 0.082 0.918 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.037 0.963 23 H 0.188 0.812 24 H 0.106 0.894 25 H 0.155 0.845 26 H 0.116 0.884 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.814 -8.089 -2.753 9.807 hybrid contribution -1.276 -0.059 -0.876 1.548 sum 3.538 -8.148 -3.629 9.595 Atomic orbital electron populations 1.69992 1.07241 1.28763 1.49609 1.25658 0.95762 1.02521 0.93516 0.85332 0.78452 0.78439 0.78429 1.19918 1.19665 1.19382 1.21239 0.92782 0.90639 1.53375 0.93563 1.19460 0.87110 0.82282 0.98299 1.46147 1.33388 1.25505 1.03947 1.24112 1.04666 1.00203 0.93138 1.85588 1.42281 1.56119 0.99423 1.70077 1.17021 1.18489 1.11219 1.22799 1.07000 1.01663 0.91589 1.20225 1.01729 0.95682 0.88735 1.57753 1.08518 1.58544 1.00135 1.23317 0.90712 0.93811 0.97531 1.21234 1.02116 0.98492 0.87130 0.91767 0.95057 0.93847 0.96256 0.81231 0.89410 0.84496 0.88426 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.74 13.29 21.45 0.28 -51.46 15 2 C 0.03 1.45 5.46 84.65 0.46 1.91 15 3 Si 0.97 43.47 29.54 68.60 2.03 45.49 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.54 -30.51 9.39 25.60 0.24 -30.27 15 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 15 9 C 0.25 12.98 5.73 85.63 0.49 13.48 15 10 N -0.41 -19.28 2.80 -523.92 -1.47 -20.75 15 11 C 0.15 6.61 8.23 179.65 1.48 8.09 15 12 S 0.01 0.51 25.58 -56.49 -1.44 -0.93 15 13 N -0.45 -19.59 11.29 -182.93 -2.07 -21.65 15 14 C -0.09 -3.58 8.09 41.65 0.34 -3.24 15 15 C 0.15 6.45 8.25 129.89 1.07 7.52 15 16 N -0.62 -20.15 7.23 -336.73 -2.43 -22.58 15 17 C 0.07 1.63 7.86 86.65 0.68 2.31 15 18 C -0.05 -1.25 7.05 30.71 0.22 -1.04 15 19 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 20 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.04 2.33 7.73 -2.38 -0.02 2.32 15 22 H 0.07 2.50 9.07 73.35 0.67 3.16 15 23 H 0.36 10.05 8.86 -89.70 -0.79 9.26 15 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.14 1.72 8.14 -2.38 -0.02 1.70 15 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -67.03 253.60 0.96 -66.07 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.08 Total: 7.05 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.98 Total: -1.23 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -5.68 Total: -116.44 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -1.44 Total: -0.93 kcal Total: -67.03 0.96 -66.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.822 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds