Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30428 * 126.33224 * 90.02678 * 10 9 7 12 12 N 1.28554 * 109.61971 * 180.21441 * 11 10 9 13 13 C 1.30657 * 109.51716 * 0.15904 * 12 11 10 14 14 N 1.34779 * 107.66123 * 359.25781 * 13 12 11 15 15 C 1.46022 * 129.36121 * 181.24421 * 14 13 12 16 16 C 1.52798 * 111.37585 * 339.73091 * 15 14 13 17 17 S 1.81923 * 108.77400 * 52.16296 * 16 15 14 18 18 C 1.51134 * 125.28672 * 179.12568 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08996 * 109.09970 * 100.21479 * 15 14 13 23 23 H 1.08993 * 109.10279 * 219.30417 * 15 14 13 24 24 H 1.08998 * 109.59045 * 171.94911 * 16 15 14 25 25 H 1.09005 * 109.58930 * 292.23605 * 16 15 14 26 26 H 1.09000 * 109.73487 * 282.73352 * 18 13 12 27 27 H 1.08993 * 109.73327 * 43.43380 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7319 -4.2370 1.0378 12 7 3.5356 -5.1681 0.6640 13 6 3.5826 -5.2063 -0.6411 14 7 2.7494 -4.2555 -1.1083 15 6 2.4233 -3.9065 -2.4882 16 6 3.4939 -4.4065 -3.4570 17 16 3.7743 -6.1786 -3.1561 18 6 4.4308 -6.1546 -1.4568 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 1.4657 -4.3549 -2.7527 23 1 2.3450 -2.8227 -2.5731 24 1 3.1562 -4.2590 -4.4828 25 1 4.4201 -3.8551 -3.2944 26 1 5.4664 -5.8145 -1.4575 27 1 4.3723 -7.1574 -1.0337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = 70.637723 kcal Electronic energy + Delta-G solvation = -13345.030544 eV Core-core repulsion = 11037.215330 eV Total energy + Delta-G solvation = -2307.815214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.60118 -35.66824 -33.78088 -32.13111 -30.68200 -29.23034 -26.56144 -24.15658 -23.56589 -20.49177 -20.14945 -16.95610 -16.57096 -16.37910 -15.64167 -14.80176 -14.76169 -14.25589 -13.81392 -13.50392 -12.90239 -12.44520 -12.21311 -11.93617 -11.59994 -11.09136 -10.86494 -10.81147 -10.38397 -10.12714 -9.75178 -9.66211 -9.60685 -8.62162 -8.26922 -8.00863 -6.24591 -4.30231 1.34684 2.04330 2.39931 2.91574 3.18995 3.27286 3.31857 3.53380 4.25696 4.29688 4.36325 4.74331 5.08275 5.10099 5.13442 5.31371 5.48017 5.53581 5.54510 5.93033 6.34233 6.71803 7.13767 7.32849 7.44123 7.69585 8.00898 8.71904 9.34695 9.39210 10.85282 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038653 B = 0.008007 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.220308 B = 3496.019524 C = 3808.870776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.095 3.905 10 C 0.237 3.763 11 N -0.312 5.312 12 N -0.289 5.289 13 C 0.128 3.872 14 N -0.468 5.468 15 C 0.106 3.894 16 C -0.097 4.097 17 S -0.243 6.243 18 C 0.017 3.983 19 H 0.266 0.734 20 H 0.059 0.941 21 H 0.039 0.961 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.131 0.869 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -7.784 -9.246 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.056 3.944 10 C -0.029 4.029 11 N -0.150 5.150 12 N -0.131 5.131 13 C -0.140 4.140 14 N -0.161 5.161 15 C -0.019 4.019 16 C -0.246 4.246 17 S -0.016 6.016 18 C -0.133 4.133 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.113 0.887 23 H 0.137 0.863 24 H 0.149 0.851 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.629 -8.930 -8.509 13.558 hybrid contribution 0.405 2.250 -0.595 2.363 sum 6.034 -6.680 -9.103 12.803 Atomic orbital electron populations 1.69934 1.06015 1.27392 1.49260 1.24947 0.94919 0.99330 0.94580 0.86444 0.79946 0.82652 0.78190 1.20512 1.20829 1.19691 1.20856 0.93025 0.89299 1.52743 0.92477 1.17961 0.90466 0.85952 1.00020 1.26264 0.98771 0.97220 0.80635 1.74185 1.10456 1.06247 1.24137 1.74242 1.16276 1.15835 1.06714 1.23783 1.00084 0.96856 0.93290 1.45753 1.34365 1.27225 1.08715 1.21840 0.98436 1.04056 0.77598 1.23726 1.02689 0.94545 1.03609 1.87104 1.85688 1.10948 1.17902 1.21754 0.99123 1.01176 0.91232 0.92406 0.92342 0.94257 0.88701 0.86308 0.85136 0.88475 0.87287 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 13.29 55.43 0.74 -23.88 15 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -13.88 9.09 -34.44 -0.31 -14.19 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.10 2.36 5.15 -29.03 -0.15 2.21 15 10 C 0.24 5.44 7.18 -154.64 -1.11 4.33 15 11 N -0.31 -7.63 12.21 32.86 0.40 -7.23 15 12 N -0.29 -6.35 12.23 32.80 0.40 -5.95 15 13 C 0.13 2.35 7.63 -155.31 -1.19 1.17 15 14 N -0.47 -8.83 3.11 -111.02 -0.35 -9.18 15 15 C 0.11 1.53 6.07 -4.40 -0.03 1.50 15 16 C -0.10 -1.07 6.55 37.05 0.24 -0.83 15 17 S -0.24 -2.92 22.37 -107.50 -2.40 -5.33 15 18 C 0.02 0.23 6.90 36.22 0.25 0.48 15 19 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.06 1.57 8.14 -51.93 -0.42 1.14 15 21 H 0.04 0.95 7.81 -51.93 -0.41 0.54 15 22 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.12 1.79 7.97 -51.93 -0.41 1.38 15 24 H 0.13 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.11 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.13 1.52 8.14 -51.93 -0.42 1.10 15 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -30.97 248.76 -7.77 -38.74 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.90 Total: -2.81 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.39 Total: -3.69 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 1.19 Total: -46.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.40 Total: -5.33 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.97 -7.77 -38.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.380 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds