Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30428 * 126.33224 * 90.02678 * 10 9 7 12 12 N 1.28554 * 109.61971 * 180.21441 * 11 10 9 13 13 C 1.30657 * 109.51716 * 0.15904 * 12 11 10 14 14 N 1.34779 * 107.66123 * 359.25781 * 13 12 11 15 15 C 1.46022 * 129.36121 * 181.24421 * 14 13 12 16 16 C 1.52798 * 111.37585 * 339.73091 * 15 14 13 17 17 S 1.81923 * 108.77400 * 52.16296 * 16 15 14 18 18 C 1.51134 * 125.28672 * 179.12568 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08996 * 109.09970 * 100.21479 * 15 14 13 23 23 H 1.08993 * 109.10279 * 219.30417 * 15 14 13 24 24 H 1.08998 * 109.59045 * 171.94911 * 16 15 14 25 25 H 1.09005 * 109.58930 * 292.23605 * 16 15 14 26 26 H 1.09000 * 109.73487 * 282.73352 * 18 13 12 27 27 H 1.08993 * 109.73327 * 43.43380 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7319 -4.2370 1.0378 12 7 3.5356 -5.1681 0.6640 13 6 3.5826 -5.2063 -0.6411 14 7 2.7494 -4.2555 -1.1083 15 6 2.4233 -3.9065 -2.4882 16 6 3.4939 -4.4065 -3.4570 17 16 3.7743 -6.1786 -3.1561 18 6 4.4308 -6.1546 -1.4568 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 1.4657 -4.3549 -2.7527 23 1 2.3450 -2.8227 -2.5731 24 1 3.1562 -4.2590 -4.4828 25 1 4.4201 -3.8551 -3.2944 26 1 5.4664 -5.8145 -1.4575 27 1 4.3723 -7.1574 -1.0337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259620467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = 51.981735 kcal Electronic energy + Delta-G solvation = -13345.839528 eV Core-core repulsion = 11037.215330 eV Total energy + Delta-G solvation = -2308.624198 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.20261 -37.05087 -35.70510 -33.77131 -31.95901 -30.86700 -28.22035 -25.53021 -25.33017 -22.12665 -21.59354 -18.78236 -17.99834 -17.77698 -16.92272 -16.66288 -16.00492 -15.53677 -15.03260 -14.85811 -14.35150 -14.16949 -13.69463 -13.48484 -13.10334 -12.73147 -12.65114 -12.47585 -12.04180 -11.75838 -11.51545 -11.20319 -11.06651 -10.66894 -9.96321 -8.94594 -8.29506 -6.43080 0.35785 0.80496 1.11516 1.38726 1.42288 1.51249 1.54299 1.82891 2.37849 3.02895 3.05412 3.23748 3.71336 3.84130 4.07432 4.16512 4.19136 4.41137 4.47548 4.55899 4.82426 5.03520 5.20001 5.33960 5.60389 5.86036 6.02192 6.62863 7.26153 7.73261 8.80612 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038653 B = 0.008007 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.220308 B = 3496.019524 C = 3808.870776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.109 3.891 10 C 0.215 3.785 11 N -0.349 5.349 12 N -0.326 5.326 13 C 0.151 3.849 14 N -0.464 5.464 15 C 0.096 3.904 16 C -0.090 4.090 17 S -0.226 6.226 18 C 0.013 3.987 19 H 0.271 0.729 20 H 0.026 0.974 21 H 0.041 0.959 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.167 0.833 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -7.908 -11.322 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.070 3.930 10 C -0.053 4.053 11 N -0.188 5.188 12 N -0.167 5.167 13 C -0.119 4.119 14 N -0.155 5.155 15 C -0.028 4.028 16 C -0.238 4.238 17 S 0.000 6.000 18 C -0.137 4.137 19 H 0.080 0.920 20 H 0.044 0.956 21 H 0.059 0.941 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.184 0.816 25 H 0.122 0.878 26 H 0.151 0.849 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.888 -9.068 -10.612 15.565 hybrid contribution 0.011 2.208 -0.002 2.208 sum 6.899 -6.860 -10.614 14.398 Atomic orbital electron populations 1.70025 1.07352 1.28513 1.49692 1.25730 0.95703 1.02566 0.93875 0.85436 0.78225 0.78410 0.78925 1.18697 1.20378 1.20157 1.20998 0.92580 0.90522 1.53189 0.93572 1.17595 0.90474 0.86498 0.98450 1.25745 0.99735 0.97760 0.82046 1.74062 1.11569 1.07398 1.25761 1.74146 1.17298 1.16345 1.08938 1.24724 0.98412 0.95889 0.92836 1.45932 1.33563 1.26498 1.09527 1.22195 1.00571 1.03993 0.76037 1.23812 1.01815 0.93873 1.04277 1.87156 1.85545 1.11340 1.15911 1.22062 0.99274 1.00770 0.91574 0.92002 0.95579 0.94099 0.87502 0.87165 0.81563 0.87804 0.84889 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.29 13.29 21.45 0.28 -51.00 15 2 C 0.02 1.17 5.46 84.66 0.46 1.63 15 3 Si 0.97 41.98 29.54 68.60 2.03 44.01 15 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.53 -29.04 9.09 25.60 0.23 -28.81 15 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.11 5.60 5.15 29.10 0.15 5.75 15 10 C 0.22 10.11 7.18 137.86 0.99 11.10 15 11 N -0.35 -17.59 12.21 -49.94 -0.61 -18.20 15 12 N -0.33 -14.42 12.23 -50.14 -0.61 -15.03 15 13 C 0.15 5.37 7.63 138.30 1.06 6.43 15 14 N -0.46 -17.20 3.11 -505.16 -1.57 -18.77 15 15 C 0.10 2.59 6.07 86.40 0.52 3.11 15 16 C -0.09 -1.66 6.55 71.91 0.47 -1.19 15 17 S -0.23 -4.63 22.37 -56.49 -1.26 -5.90 15 18 C 0.01 0.31 6.90 71.37 0.49 0.80 15 19 H 0.27 14.18 8.31 -92.70 -0.77 13.41 15 20 H 0.03 1.48 8.14 -2.38 -0.02 1.46 15 21 H 0.04 2.03 7.81 -2.39 -0.02 2.01 15 22 H 0.11 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.11 3.22 7.97 -2.39 -0.02 3.20 15 24 H 0.17 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.10 1.87 8.14 -2.38 -0.02 1.85 15 26 H 0.13 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.15 2.99 8.14 -2.39 -0.02 2.97 15 Total: -1.00 -67.83 248.76 3.80 -64.03 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.17 Total: 2.03 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.38 Total: -1.17 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -2.51 Total: -103.00 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.26 Total: -5.90 kcal Total: -67.83 3.80 -64.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.010 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds