Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48504 * 109.47129 * 240.00071 * 3 2 1 5 5 H 1.48504 * 109.46928 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 119.99698 * 3 2 1 7 7 C 1.37878 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00740 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47277 * 179.97438 * 10 9 7 12 12 O 1.20764 * 120.00131 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99916 * 179.97438 * 11 10 9 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 11 10 15 15 C 1.33635 * 122.75319 * 124.73143 * 14 13 11 16 16 S 1.76192 * 107.92524 * 179.97438 * 15 14 13 17 17 C 1.70976 * 90.28427 * 0.27803 * 16 15 14 18 18 N 1.29027 * 110.16712 * 359.83656 * 17 16 15 19 19 H 0.97004 * 120.00175 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47504 * 59.99263 * 9 7 2 21 21 H 1.08996 * 109.47046 * 299.99798 * 9 7 2 22 22 H 1.08992 * 109.47223 * 59.99665 * 10 9 7 23 23 H 1.09007 * 109.46666 * 299.99516 * 10 9 7 24 24 H 1.08997 * 109.47434 * 59.99488 * 13 11 10 25 25 H 1.08998 * 109.47220 * 299.99515 * 13 11 10 26 26 H 1.08001 * 126.03202 * 0.03585 * 15 14 13 27 27 H 1.08001 * 124.91761 * 179.84059 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2840 -4.9672 0.0020 13 6 2.2451 -6.2722 0.0007 14 6 1.2658 -7.4177 0.0021 15 6 1.2816 -8.3836 -0.9212 16 16 -0.0195 -9.5116 -0.5485 17 6 -0.4607 -8.5679 0.8073 18 7 0.3195 -7.5455 0.9105 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5570 -0.8896 21 1 0.6240 -2.5566 0.8903 22 1 2.8718 -3.6044 0.8904 23 1 2.8718 -3.6044 -0.8896 24 1 2.8725 -6.3299 0.8902 25 1 2.8711 -6.3301 -0.8897 26 1 1.9710 -8.4599 -1.7491 27 1 -1.2747 -8.7947 1.4799 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259642152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = -27.733401 kcal Electronic energy + Delta-G solvation = -12582.669571 eV Core-core repulsion = 10238.295914 eV Total energy + Delta-G solvation = -2344.373657 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18886 -39.73470 -35.57582 -33.43321 -32.75968 -29.67086 -27.50298 -25.79514 -23.60420 -20.76413 -20.26116 -18.94054 -18.47517 -16.89114 -16.75478 -16.51707 -16.10759 -15.55156 -15.10254 -14.32599 -14.24143 -14.09789 -13.97595 -13.16808 -13.02739 -12.76685 -12.53399 -12.30746 -11.87620 -11.64430 -11.33410 -10.57462 -10.57275 -10.45670 -10.27117 -9.67082 -8.19204 -6.33719 -0.17433 0.55121 0.80588 1.23259 1.40592 1.45460 1.53163 1.85655 2.41160 3.13274 3.31920 3.37939 4.01426 4.28419 4.41999 4.45053 4.60549 4.63906 4.74745 4.82912 5.14050 5.30168 5.47962 5.62936 5.83710 6.17179 6.79480 6.87950 6.89514 7.36781 8.93159 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.082131 B = 0.004743 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.837070 B = 5902.444928 C = 6085.276679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.010 4.010 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.035 3.965 10 C -0.153 4.153 11 C 0.353 3.647 12 O -0.491 6.491 13 C -0.090 4.090 14 C 0.045 3.955 15 C -0.253 4.253 16 S 0.157 5.843 17 C 0.006 3.994 18 N -0.500 5.500 19 H 0.263 0.737 20 H -0.021 1.021 21 H -0.024 1.024 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.132 0.868 25 H 0.151 0.849 26 H 0.208 0.792 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -19.904 -1.927 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.095 0.905 9 C -0.002 4.002 10 C -0.190 4.190 11 C 0.230 3.770 12 O -0.367 6.367 13 C -0.129 4.129 14 C -0.087 4.087 15 C -0.392 4.392 16 S 0.409 5.591 17 C -0.292 4.292 18 N -0.214 5.214 19 H 0.071 0.929 20 H -0.002 1.002 21 H -0.006 1.006 22 H 0.124 0.876 23 H 0.131 0.869 24 H 0.150 0.850 25 H 0.169 0.831 26 H 0.225 0.775 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.965 -20.373 -1.908 21.055 hybrid contribution 0.233 1.777 0.198 1.803 sum 5.198 -18.596 -1.710 19.384 Atomic orbital electron populations 1.70174 1.08389 1.27863 1.51566 1.26185 0.95745 1.04106 0.94638 0.85359 0.78046 0.77215 0.79545 1.18515 1.21360 1.18689 1.21735 0.94049 0.91730 1.50696 0.90533 1.18752 0.93999 0.93315 0.94182 1.22101 0.99773 0.92053 1.05107 1.25196 0.89422 0.93177 0.69222 1.90383 1.19167 1.90391 1.36723 1.20900 0.96479 0.87371 1.08186 1.20236 0.97163 0.98431 0.92844 1.27239 1.06122 0.99525 1.06346 1.83613 1.24946 1.26612 1.23886 1.28825 1.03799 0.94024 1.02549 1.66057 1.05816 1.20819 1.28666 0.92888 1.00244 1.00554 0.87581 0.86948 0.84990 0.83100 0.77504 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.74 13.29 21.45 0.28 -60.46 15 2 C -0.01 -0.57 5.46 84.66 0.46 -0.11 15 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.54 -31.53 9.11 25.60 0.23 -31.29 15 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 15 9 C 0.03 1.97 4.26 29.85 0.13 2.09 15 10 C -0.15 -6.11 5.58 29.85 0.17 -5.94 15 11 C 0.35 13.35 7.12 29.10 0.21 13.56 15 12 O -0.49 -24.02 15.07 -1.46 -0.02 -24.04 15 13 C -0.09 -2.24 6.13 29.10 0.18 -2.06 15 14 C 0.04 1.24 5.64 41.52 0.23 1.48 15 15 C -0.25 -5.24 11.07 66.77 0.74 -4.50 15 16 S 0.16 2.84 23.22 -56.49 -1.31 1.53 15 17 C 0.01 0.14 12.23 130.65 1.60 1.74 15 18 N -0.50 -16.09 9.68 -191.54 -1.85 -17.94 15 19 H 0.26 15.90 8.31 -92.71 -0.77 15.13 15 20 H -0.02 -1.33 8.10 -2.38 -0.02 -1.35 15 21 H -0.02 -1.55 8.10 -2.39 -0.02 -1.57 15 22 H 0.11 3.76 8.14 -2.39 -0.02 3.74 15 23 H 0.11 3.82 8.14 -2.38 -0.02 3.80 15 24 H 0.13 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.15 2.44 8.03 -2.39 -0.02 2.42 15 26 H 0.21 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.22 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -81.61 259.53 4.23 -77.38 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.16 Total: 1.67 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.95 Total: -25.03 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.57 Total: -78.40 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.02 Total: -24.04 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.31 Total: 1.53 kcal Total: -81.61 4.23 -77.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.644 kcal (2) G-P(sol) polarization free energy of solvation -81.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds