Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29030 * 124.91553 * 2 1 4 4 C 1.31783 * 117.12086 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.74505 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47266 * 305.02041 * 5 4 3 7 7 O 1.20755 * 119.99811 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46817 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 6 12 12 N 1.31522 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46946 * 59.99892 * 13 11 9 15 15 H 1.48496 * 109.46933 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46921 * 299.99575 * 13 11 9 17 17 C 1.33638 * 114.50405 * 0.22571 * 4 3 2 18 18 S 1.70978 * 124.91504 * 179.97438 * 2 1 3 19 19 H 1.09004 * 109.46740 * 90.00488 * 1 2 3 20 20 H 1.08992 * 109.47706 * 210.00561 * 1 2 3 21 21 H 1.09005 * 109.47140 * 330.01107 * 1 2 3 22 22 H 1.09004 * 109.47205 * 185.02134 * 5 4 3 23 23 H 1.08997 * 109.47395 * 65.02627 * 5 4 3 24 24 H 1.09000 * 109.47318 * 299.99467 * 8 6 5 25 25 H 1.09000 * 109.47161 * 60.00098 * 8 6 5 26 26 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 27 27 H 1.07997 * 126.03726 * 179.76707 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9355 -1.1643 7 8 3.3276 2.6812 -1.9158 8 6 5.0814 4.1637 -1.3907 9 6 4.5843 4.8966 -2.6100 10 1 3.7422 4.5112 -3.1657 11 6 5.2052 6.0584 -3.0169 12 7 6.2310 6.5274 -2.3405 13 14 4.5886 6.9672 -4.5280 14 1 3.1744 7.3699 -4.3206 15 1 5.4198 8.1774 -4.7511 16 1 4.6813 6.0771 -5.7130 17 6 3.9354 -0.4006 -0.0038 18 16 2.4856 -1.4020 0.0006 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8898 0.5139 21 1 -0.3634 0.8901 0.5137 22 1 5.5449 1.6352 -0.0893 23 1 4.4369 2.5833 0.9311 24 1 5.0122 4.8174 -0.5211 25 1 6.1197 3.8686 -1.5418 26 1 6.6681 7.3445 -2.6269 27 1 4.9545 -0.7581 -0.0077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259670249.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -4.110698 kcal Electronic energy + Delta-G solvation = -12717.796371 eV Core-core repulsion = 10374.447071 eV Total energy + Delta-G solvation = -2343.349299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90051 -37.88074 -32.91303 -32.88171 -30.05731 -28.59110 -27.48483 -23.85333 -22.41822 -19.61608 -18.84219 -17.23914 -16.25577 -15.37927 -15.16722 -14.60190 -14.15189 -13.98938 -13.82462 -13.29462 -12.73549 -12.45508 -12.13838 -11.87382 -11.80092 -11.29194 -11.01086 -10.77908 -10.55194 -9.98085 -9.42467 -9.26889 -9.24281 -8.70339 -8.40706 -8.16733 -6.03166 -4.03436 0.85807 1.48973 1.83634 3.01129 3.16159 3.37929 3.40060 3.45791 4.20480 4.47255 5.01537 5.12271 5.28820 5.32289 5.34320 5.44462 5.53896 5.77783 5.88390 6.00982 6.29226 6.77412 7.26900 7.38935 7.96266 7.99592 8.27052 8.79995 9.05785 9.61301 11.08894 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051138 B = 0.005850 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.405218 B = 4785.489827 C = 5111.013942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.446 5.446 4 C 0.095 3.905 5 C -0.108 4.108 6 C 0.357 3.643 7 O -0.449 6.449 8 C -0.023 4.023 9 C -0.515 4.515 10 H 0.071 0.929 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.263 4.263 18 S 0.083 5.917 19 H 0.085 0.915 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.262 0.738 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -14.770 7.274 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.227 4.227 3 N -0.160 5.160 4 C -0.036 4.036 5 C -0.149 4.149 6 C 0.231 3.769 7 O -0.321 6.321 8 C -0.060 4.060 9 C -0.553 4.553 10 H 0.089 0.911 11 C -0.145 4.145 12 N -0.540 5.540 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.402 4.402 18 S 0.337 5.663 19 H 0.104 0.896 20 H 0.096 0.904 21 H 0.107 0.893 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.612 -15.332 6.873 18.056 hybrid contribution 0.618 1.227 -0.712 1.547 sum -5.994 -14.105 6.162 16.518 Atomic orbital electron populations 1.20417 0.85411 1.03827 1.03907 1.27041 1.01696 0.90483 1.03507 1.66035 1.04596 1.31026 1.14390 1.20048 0.90115 0.93809 0.99651 1.21064 0.97188 0.94015 1.02593 1.24989 0.83383 0.86503 0.82014 1.90258 1.27144 1.71245 1.43443 1.19582 0.96008 0.91033 0.99403 1.21151 1.15841 1.07661 1.10613 0.91109 1.24998 0.94950 0.97252 0.97270 1.69950 1.21804 1.22339 1.39919 0.86532 0.78819 0.78856 0.83099 1.20137 1.21325 1.20184 1.26723 1.02741 0.95537 1.15186 1.83686 0.98733 1.13765 1.70102 0.89615 0.90408 0.89288 0.87556 0.87375 0.92996 0.93076 0.92875 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.46 36.01 0.38 -0.42 15 2 C 0.05 0.76 7.39 -13.45 -0.10 0.66 15 3 N -0.45 -8.19 9.68 -8.06 -0.08 -8.27 15 4 C 0.10 1.64 5.64 -84.23 -0.47 1.16 15 5 C -0.11 -1.84 6.13 -29.04 -0.18 -2.02 15 6 C 0.36 8.10 7.12 -29.03 -0.21 7.89 15 7 O -0.45 -11.67 14.55 6.00 0.09 -11.58 15 8 C -0.02 -0.60 5.40 -29.03 -0.16 -0.76 15 9 C -0.51 -15.12 8.92 -34.44 -0.31 -15.43 15 10 H 0.07 2.16 6.76 -52.48 -0.35 1.81 15 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 12 N -0.90 -26.74 13.29 55.43 0.74 -26.01 15 13 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 15 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 15 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 C -0.26 -3.71 11.07 29.12 0.32 -3.39 15 18 S 0.08 1.03 23.18 -107.50 -2.49 -1.46 15 19 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.11 1.48 8.03 -51.93 -0.42 1.06 15 23 H 0.11 1.66 8.14 -51.93 -0.42 1.24 15 24 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.05 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 27 H 0.18 1.95 8.06 -52.49 -0.42 1.52 15 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -34.08 259.14 -6.55 -40.63 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -2.87 Total: -3.86 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.82 Total: -10.77 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.66 Total: -34.28 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.08 -6.55 -40.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670249.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.522 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds