Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29030 * 124.91553 * 2 1 4 4 C 1.31783 * 117.12086 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.74505 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47266 * 305.02041 * 5 4 3 7 7 O 1.20755 * 119.99811 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46817 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 6 12 12 N 1.31522 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46946 * 59.99892 * 13 11 9 15 15 H 1.48496 * 109.46933 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46921 * 299.99575 * 13 11 9 17 17 C 1.33638 * 114.50405 * 0.22571 * 4 3 2 18 18 S 1.70978 * 124.91504 * 179.97438 * 2 1 3 19 19 H 1.09004 * 109.46740 * 90.00488 * 1 2 3 20 20 H 1.08992 * 109.47706 * 210.00561 * 1 2 3 21 21 H 1.09005 * 109.47140 * 330.01107 * 1 2 3 22 22 H 1.09004 * 109.47205 * 185.02134 * 5 4 3 23 23 H 1.08997 * 109.47395 * 65.02627 * 5 4 3 24 24 H 1.09000 * 109.47318 * 299.99467 * 8 6 5 25 25 H 1.09000 * 109.47161 * 60.00098 * 8 6 5 26 26 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 27 27 H 1.07997 * 126.03726 * 179.76707 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9355 -1.1643 7 8 3.3276 2.6812 -1.9158 8 6 5.0814 4.1637 -1.3907 9 6 4.5843 4.8966 -2.6100 10 1 3.7422 4.5112 -3.1657 11 6 5.2052 6.0584 -3.0169 12 7 6.2310 6.5274 -2.3405 13 14 4.5886 6.9672 -4.5280 14 1 3.1744 7.3699 -4.3206 15 1 5.4198 8.1774 -4.7511 16 1 4.6813 6.0771 -5.7130 17 6 3.9354 -0.4006 -0.0038 18 16 2.4856 -1.4020 0.0006 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8898 0.5139 21 1 -0.3634 0.8901 0.5137 22 1 5.5449 1.6352 -0.0893 23 1 4.4369 2.5833 0.9311 24 1 5.0122 4.8174 -0.5211 25 1 6.1197 3.8686 -1.5418 26 1 6.6681 7.3445 -2.6269 27 1 4.9545 -0.7581 -0.0077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259670249.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -26.862395 kcal Electronic energy + Delta-G solvation = -12718.782958 eV Core-core repulsion = 10374.447071 eV Total energy + Delta-G solvation = -2344.335887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15689 -39.58686 -35.10848 -34.02945 -31.68078 -30.14126 -28.75209 -25.77124 -23.69167 -20.85545 -20.39675 -18.66659 -18.25369 -17.04483 -16.50020 -16.24030 -15.78166 -15.45854 -15.26128 -14.44003 -14.13495 -13.96704 -13.49352 -13.26979 -13.01581 -12.94791 -12.79214 -12.54802 -12.32223 -12.04956 -11.47127 -10.63473 -10.53456 -10.33202 -10.17730 -9.53228 -8.25763 -6.33852 -0.20365 0.48950 0.76978 1.36882 1.37472 1.39912 1.48336 1.84075 2.38896 3.08439 3.19963 3.55265 3.92840 4.23033 4.39637 4.52690 4.60178 4.65164 4.76345 4.90511 5.04049 5.17158 5.30126 5.32555 5.69559 6.13178 6.77400 6.92061 7.00472 7.34858 8.85691 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051138 B = 0.005850 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.405218 B = 4785.489827 C = 5111.013942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.028 3.972 3 N -0.500 5.500 4 C 0.057 3.943 5 C -0.094 4.094 6 C 0.361 3.639 7 O -0.487 6.487 8 C -0.026 4.026 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.010 3.990 12 N -0.924 5.924 13 Si 0.960 3.040 14 H -0.274 1.274 15 H -0.272 1.272 16 H -0.272 1.272 17 C -0.262 4.262 18 S 0.154 5.846 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.082 0.918 22 H 0.141 0.859 23 H 0.123 0.877 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 -16.284 7.477 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.250 4.250 3 N -0.216 5.216 4 C -0.074 4.074 5 C -0.134 4.134 6 C 0.238 3.762 7 O -0.363 6.363 8 C -0.063 4.063 9 C -0.582 4.582 10 H 0.068 0.932 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.785 3.215 14 H -0.200 1.200 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.401 4.401 18 S 0.409 5.591 19 H 0.107 0.893 20 H 0.129 0.871 21 H 0.101 0.899 22 H 0.159 0.841 23 H 0.140 0.860 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.639 -16.858 7.095 19.457 hybrid contribution 0.622 1.614 -0.750 1.885 sum -6.017 -15.244 6.345 17.574 Atomic orbital electron populations 1.20583 0.83333 1.05210 1.04516 1.27650 1.03353 0.91145 1.02816 1.66025 1.05620 1.33456 1.16476 1.20071 0.90058 0.94757 1.02515 1.20892 0.99203 0.93413 0.99874 1.25123 0.81745 0.86167 0.83181 1.90236 1.28515 1.72090 1.45412 1.19536 0.96510 0.92543 0.97760 1.21405 1.15790 1.08849 1.12197 0.93159 1.25779 0.95048 0.97860 1.00142 1.70022 1.22415 1.22774 1.41156 0.85575 0.78420 0.78000 0.79493 1.19954 1.19718 1.19738 1.27149 1.05078 0.95097 1.12739 1.83379 0.96434 1.11141 1.68173 0.89259 0.87098 0.89878 0.84113 0.85961 0.93780 0.93213 0.92390 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.46 71.24 0.75 -0.77 15 2 C 0.03 0.79 7.39 88.52 0.65 1.45 15 3 N -0.50 -18.22 9.68 -179.40 -1.74 -19.96 15 4 C 0.06 1.90 5.64 41.52 0.23 2.14 15 5 C -0.09 -3.12 6.13 29.10 0.18 -2.94 15 6 C 0.36 16.62 7.12 29.10 0.21 16.82 15 7 O -0.49 -26.05 14.55 -1.44 -0.02 -26.08 15 8 C -0.03 -1.39 5.40 29.10 0.16 -1.23 15 9 C -0.54 -32.79 8.92 25.60 0.23 -32.56 15 10 H 0.05 3.18 6.76 -2.91 -0.02 3.16 15 11 C 0.01 0.61 5.46 84.65 0.46 1.07 15 12 N -0.92 -55.08 13.29 21.45 0.28 -54.79 15 13 Si 0.96 46.20 29.54 68.60 2.03 48.22 15 14 H -0.27 -13.03 7.11 99.48 0.71 -12.33 15 15 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 16 H -0.27 -12.83 7.11 99.48 0.71 -12.13 15 17 C -0.26 -6.70 11.07 66.78 0.74 -5.96 15 18 S 0.15 3.37 23.18 -56.49 -1.31 2.06 15 19 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.08 1.73 8.14 -2.38 -0.02 1.71 15 22 H 0.14 3.59 8.03 -2.38 -0.02 3.57 15 23 H 0.12 3.64 8.14 -2.39 -0.02 3.62 15 24 H 0.04 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.05 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 27 H 0.20 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -74.75 259.14 4.02 -70.73 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.17 Total: 1.79 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.61 Total: -21.97 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.45 Total: -74.75 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.02 Total: -26.08 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.31 Total: 2.06 kcal Total: -74.75 4.02 -70.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670249.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.867 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds