Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28714 * 125.10283 * 2 1 4 4 C 1.33582 * 116.00186 * 179.97438 * 3 2 1 5 5 C 1.46436 * 122.72556 * 179.97438 * 4 3 2 6 6 O 1.21361 * 120.00115 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99848 * 0.02901 * 5 4 3 8 8 C 1.53006 * 109.46866 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47141 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47494 * 119.99680 * 13 11 9 16 16 H 1.48505 * 109.47047 * 239.99860 * 13 11 9 17 17 C 1.36515 * 114.55461 * 0.25267 * 4 3 2 18 18 S 1.71003 * 108.91856 * 359.62810 * 17 4 3 19 19 H 1.08993 * 109.47085 * 89.99264 * 1 2 3 20 20 H 1.08997 * 109.47098 * 209.99839 * 1 2 3 21 21 H 1.09006 * 109.46475 * 329.99300 * 1 2 3 22 22 H 1.09000 * 109.47247 * 60.00030 * 7 5 4 23 23 H 1.09001 * 109.47358 * 299.99456 * 7 5 4 24 24 H 1.08993 * 109.46955 * 300.00219 * 8 7 5 25 25 H 1.09000 * 109.47050 * 60.00048 * 8 7 5 26 26 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 27 27 H 1.07998 * 125.53820 * 179.70737 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2472 1.0530 0.0000 4 6 3.5662 0.8417 0.0005 5 6 4.5427 1.9329 0.0001 6 8 5.7306 1.6842 0.0001 7 6 4.0727 3.3647 -0.0004 8 6 5.2842 4.2992 -0.0002 9 6 4.8141 5.7310 -0.0013 10 1 3.7570 5.9523 -0.0025 11 6 5.7335 6.7585 -0.0019 12 7 7.0208 6.4890 -0.0009 13 14 5.1510 8.5332 -0.0025 14 1 3.6663 8.5669 -0.0030 15 1 5.6618 9.2225 1.2096 16 1 5.6616 9.2214 -1.2154 17 6 3.9299 -0.4740 -0.0045 18 16 2.5185 -1.4395 0.0006 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3632 0.8900 0.5140 22 1 3.4712 3.5500 0.8895 23 1 3.4711 3.5494 -0.8905 24 1 5.8854 4.1144 0.8900 25 1 5.8860 4.1141 -0.8900 26 1 7.6676 7.2118 -0.0010 27 1 4.9442 -0.8449 -0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259719453.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -10.901619 kcal Electronic energy + Delta-G solvation = -12566.356791 eV Core-core repulsion = 10222.713015 eV Total energy + Delta-G solvation = -2343.643776 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03676 -38.09473 -33.45103 -32.31009 -30.98895 -28.43293 -26.75518 -24.31575 -21.63867 -20.26348 -19.30483 -17.56093 -16.36211 -15.72185 -15.32485 -14.53884 -14.40252 -14.22508 -13.87707 -13.39858 -12.77926 -12.41039 -12.24412 -12.05090 -11.97802 -11.07339 -10.90996 -10.54181 -9.91459 -9.89991 -9.75886 -9.70234 -9.13901 -8.93024 -8.77169 -8.29308 -5.93157 -3.96581 0.42174 1.15101 1.53651 1.89103 3.35319 3.38309 3.42243 3.46628 3.89184 4.48131 4.67815 4.93401 5.14213 5.21680 5.26902 5.41995 5.59581 5.81225 6.09272 6.37855 6.48406 7.04545 7.44224 7.76894 7.87366 8.05977 8.08510 8.47128 9.11343 9.66839 11.18101 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.050627 B = 0.005510 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.928138 B = 5080.068468 C = 5607.247042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.058 3.942 3 N -0.421 5.421 4 C -0.013 4.013 5 C 0.422 3.578 6 O -0.445 6.445 7 C -0.140 4.140 8 C 0.028 3.972 9 C -0.522 4.522 10 H 0.058 0.942 11 C 0.056 3.944 12 N -0.892 5.892 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.217 4.217 18 S 0.125 5.875 19 H 0.087 0.913 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 -16.410 -0.004 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.224 4.224 3 N -0.135 5.135 4 C -0.145 4.145 5 C 0.296 3.704 6 O -0.318 6.318 7 C -0.178 4.178 8 C -0.009 4.009 9 C -0.560 4.560 10 H 0.076 0.924 11 C -0.145 4.145 12 N -0.531 5.531 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.358 4.358 18 S 0.381 5.619 19 H 0.106 0.894 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.508 -17.007 0.000 21.111 hybrid contribution 0.490 1.574 -0.014 1.648 sum -12.018 -15.433 -0.014 19.560 Atomic orbital electron populations 1.20455 0.84585 1.04397 1.04084 1.28076 1.01257 0.89116 1.03901 1.66915 1.03205 1.30191 1.13212 1.21749 0.91016 0.94405 1.07335 1.22327 0.86627 0.90848 0.70574 1.90541 1.18355 1.86900 1.35990 1.22020 1.02627 0.89866 1.03281 1.19004 0.91245 0.92352 0.98281 1.21269 0.92950 0.91041 1.50787 0.92409 1.25038 0.94891 0.99214 0.95375 1.70007 1.00468 1.32014 1.50644 0.86526 0.78881 0.84996 0.77529 1.19683 1.21041 1.21048 1.26984 1.05365 0.96850 1.06618 1.83765 0.97101 1.13522 1.67527 0.89399 0.90045 0.88838 0.89373 0.89376 0.96005 0.96013 0.93066 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.49 36.01 0.38 -0.16 15 2 C 0.06 0.67 7.58 -13.58 -0.10 0.57 15 3 N -0.42 -6.55 10.28 -7.22 -0.07 -6.62 15 4 C -0.01 -0.21 6.65 -84.43 -0.56 -0.78 15 5 C 0.42 8.70 7.11 -31.01 -0.22 8.48 15 6 O -0.45 -10.30 16.31 5.49 0.09 -10.21 15 7 C -0.14 -3.12 5.25 -27.88 -0.15 -3.26 15 8 C 0.03 0.78 4.26 -27.88 -0.12 0.67 15 9 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 15 10 H 0.06 1.62 7.74 -52.48 -0.41 1.21 15 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 12 N -0.89 -27.90 13.29 55.43 0.74 -27.17 15 13 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 15 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 17 C -0.22 -3.02 10.64 30.11 0.32 -2.70 15 18 S 0.12 1.27 23.17 -107.50 -2.49 -1.22 15 19 H 0.09 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 15 21 H 0.09 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 23 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.02 0.65 8.10 -51.93 -0.42 0.23 15 25 H 0.02 0.64 8.10 -51.93 -0.42 0.22 15 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 27 H 0.19 2.39 8.02 -52.49 -0.42 1.97 15 LS Contribution 261.43 15.07 3.94 3.94 Total: -1.00 -33.93 261.43 -6.60 -40.53 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: -2.92 Total: -5.15 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.86 Total: -11.22 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.66 Total: -33.79 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.93 -6.60 -40.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259719453.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.630 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds