Wall clock time and date at job start Mon Mar 30 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28714 * 125.10283 * 2 1 4 4 C 1.33582 * 116.00186 * 179.97438 * 3 2 1 5 5 C 1.46436 * 122.72556 * 179.97438 * 4 3 2 6 6 O 1.21361 * 120.00115 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99848 * 0.02901 * 5 4 3 8 8 C 1.53006 * 109.46866 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47141 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47494 * 119.99680 * 13 11 9 16 16 H 1.48505 * 109.47047 * 239.99860 * 13 11 9 17 17 C 1.36515 * 114.55461 * 0.25267 * 4 3 2 18 18 S 1.71003 * 108.91856 * 359.62810 * 17 4 3 19 19 H 1.08993 * 109.47085 * 89.99264 * 1 2 3 20 20 H 1.08997 * 109.47098 * 209.99839 * 1 2 3 21 21 H 1.09006 * 109.46475 * 329.99300 * 1 2 3 22 22 H 1.09000 * 109.47247 * 60.00030 * 7 5 4 23 23 H 1.09001 * 109.47358 * 299.99456 * 7 5 4 24 24 H 1.08993 * 109.46955 * 300.00219 * 8 7 5 25 25 H 1.09000 * 109.47050 * 60.00048 * 8 7 5 26 26 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 27 27 H 1.07998 * 125.53820 * 179.70737 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2472 1.0530 0.0000 4 6 3.5662 0.8417 0.0005 5 6 4.5427 1.9329 0.0001 6 8 5.7306 1.6842 0.0001 7 6 4.0727 3.3647 -0.0004 8 6 5.2842 4.2992 -0.0002 9 6 4.8141 5.7310 -0.0013 10 1 3.7570 5.9523 -0.0025 11 6 5.7335 6.7585 -0.0019 12 7 7.0208 6.4890 -0.0009 13 14 5.1510 8.5332 -0.0025 14 1 3.6663 8.5669 -0.0030 15 1 5.6618 9.2225 1.2096 16 1 5.6616 9.2214 -1.2154 17 6 3.9299 -0.4740 -0.0045 18 16 2.5185 -1.4395 0.0006 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3632 0.8900 0.5140 22 1 3.4712 3.5500 0.8895 23 1 3.4711 3.5494 -0.8905 24 1 5.8854 4.1144 0.8900 25 1 5.8860 4.1141 -0.8900 26 1 7.6676 7.2118 -0.0010 27 1 4.9442 -0.8449 -0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259719453.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:00 Heat of formation + Delta-G solvation = -34.103818 kcal Electronic energy + Delta-G solvation = -12567.362914 eV Core-core repulsion = 10222.713015 eV Total energy + Delta-G solvation = -2344.649899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.32345 -39.53949 -35.64122 -33.30925 -32.97745 -29.33273 -28.61309 -26.00870 -23.24842 -21.71273 -20.47790 -19.10884 -18.22400 -17.18948 -16.70663 -16.43980 -15.87433 -15.55454 -15.25631 -14.32077 -14.27170 -14.20200 -13.31380 -13.28251 -13.09037 -12.96948 -12.86103 -12.47688 -11.98053 -11.73915 -11.34495 -10.88475 -10.72901 -10.66182 -10.60087 -9.74901 -8.20972 -6.34867 -0.66336 0.24357 0.53161 0.61353 1.40104 1.41880 1.55762 2.03274 2.40189 2.83746 3.11516 3.40684 3.92514 4.15927 4.33073 4.50686 4.51094 4.64100 4.77748 4.86397 5.11962 5.25717 5.44427 5.57061 5.79896 6.13274 6.28406 6.66803 6.83111 7.34936 8.91961 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.050627 B = 0.005510 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.928138 B = 5080.068468 C = 5607.247042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.459 5.459 4 C -0.044 4.044 5 C 0.425 3.575 6 O -0.487 6.487 7 C -0.129 4.129 8 C 0.035 3.965 9 C -0.544 4.544 10 H 0.071 0.929 11 C -0.006 4.006 12 N -0.936 5.936 13 Si 0.976 3.024 14 H -0.256 1.256 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.227 4.227 18 S 0.228 5.772 19 H 0.105 0.895 20 H 0.112 0.888 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.098 0.902 24 H -0.014 1.014 25 H -0.014 1.014 26 H 0.264 0.736 27 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.791 -17.427 -0.019 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.227 4.227 3 N -0.174 5.174 4 C -0.177 4.177 5 C 0.302 3.698 6 O -0.363 6.363 7 C -0.167 4.167 8 C -0.002 4.002 9 C -0.582 4.582 10 H 0.089 0.911 11 C -0.204 4.204 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.179 1.179 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.369 4.369 18 S 0.486 5.514 19 H 0.124 0.876 20 H 0.131 0.869 21 H 0.110 0.890 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.073 0.927 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.430 -18.052 -0.015 23.747 hybrid contribution 1.322 1.709 -0.011 2.161 sum -14.108 -16.343 -0.026 21.590 Atomic orbital electron populations 1.20723 0.81453 1.05877 1.05641 1.28864 1.03058 0.89276 1.01506 1.66887 1.02593 1.32456 1.15432 1.21062 0.91178 0.93970 1.11445 1.22228 0.86877 0.91387 0.69283 1.90514 1.20022 1.87377 1.38395 1.21789 1.00152 0.90531 1.04217 1.18804 0.92644 0.93903 0.94834 1.21702 0.93737 0.91831 1.50927 0.91130 1.26143 0.94848 1.04888 0.94479 1.70169 1.02098 1.33951 1.51426 0.85245 0.79137 0.77924 0.77777 1.17936 1.20298 1.20308 1.27248 1.07794 0.96993 1.04860 1.83414 0.93083 1.10301 1.64566 0.87625 0.86907 0.89014 0.88370 0.88372 0.99553 0.99564 0.92719 0.79284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.49 71.24 0.75 -0.07 15 2 C 0.05 1.09 7.58 88.57 0.67 1.76 15 3 N -0.46 -13.76 10.28 -176.77 -1.82 -15.58 15 4 C -0.04 -1.50 6.65 40.61 0.27 -1.23 15 5 C 0.42 18.35 7.11 27.82 0.20 18.55 15 6 O -0.49 -24.01 16.31 -3.28 -0.05 -24.06 15 7 C -0.13 -5.99 5.25 29.85 0.16 -5.83 15 8 C 0.04 2.08 4.26 29.85 0.13 2.20 15 9 C -0.54 -32.66 9.11 25.60 0.23 -32.43 15 10 H 0.07 3.95 7.74 -2.91 -0.02 3.93 15 11 C -0.01 -0.37 5.46 84.65 0.46 0.09 15 12 N -0.94 -60.47 13.29 21.45 0.28 -60.19 15 13 Si 0.98 45.72 29.54 68.60 2.03 47.75 15 14 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 17 C -0.23 -6.05 10.64 67.42 0.72 -5.33 15 18 S 0.23 3.84 23.17 -56.49 -1.31 2.53 15 19 H 0.11 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.11 0.51 8.14 -2.39 -0.02 0.49 15 21 H 0.09 1.08 8.14 -2.38 -0.02 1.06 15 22 H 0.10 4.29 8.14 -2.39 -0.02 4.27 15 23 H 0.10 4.29 8.14 -2.39 -0.02 4.27 15 24 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 15 25 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 15 26 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 27 H 0.19 4.77 8.02 -2.91 -0.02 4.75 15 Total: -1.00 -77.27 261.43 3.88 -73.39 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.17 Total: -1.55 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.58 Total: -22.28 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.53 Total: -75.77 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.31 Total: 2.53 kcal Total: -77.27 3.88 -73.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259719453.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.283 kcal (2) G-P(sol) polarization free energy of solvation -77.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds