Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47404 * 300.00498 * 3 2 1 6 6 H 1.48499 * 109.47413 * 60.00563 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21353 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.46440 * 119.99873 * 179.72534 * 12 11 10 15 15 C 1.36506 * 122.71936 * 180.02562 * 14 12 11 16 16 S 1.71007 * 108.91966 * 179.97438 * 15 14 12 17 17 C 1.75930 * 90.71969 * 0.28406 * 16 15 14 18 18 N 1.28718 * 109.80798 * 359.82931 * 17 16 15 19 19 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46987 * 59.99475 * 9 7 2 21 21 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 22 22 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 23 23 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 24 24 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 25 25 H 1.09000 * 109.47665 * 300.00216 * 11 10 9 26 26 H 1.08002 * 125.54170 * 0.03394 * 15 14 12 27 27 H 1.08003 * 125.09287 * 179.82957 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0031 13 8 3.6526 -5.9109 -0.0043 14 6 1.9713 -7.5132 0.0032 15 6 2.8081 -8.5917 0.0024 16 16 1.8699 -10.0214 0.0116 17 6 0.3870 -9.0748 0.0075 18 7 0.6709 -7.8193 0.0034 19 1 -0.4850 0.8400 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8898 22 1 2.8726 -3.6047 0.8877 23 1 2.8712 -3.6040 -0.8922 24 1 0.8525 -5.0447 -0.8905 25 1 0.8544 -5.0450 0.8894 26 1 3.8872 -8.5490 -0.0023 27 1 -0.6119 -9.4855 0.0082 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259734229.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -11.221786 kcal Electronic energy + Delta-G solvation = -12432.675065 eV Core-core repulsion = 10089.017405 eV Total energy + Delta-G solvation = -2343.657659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.24216 -38.32532 -34.18710 -32.01589 -30.78680 -28.41926 -25.92759 -23.87625 -22.09836 -19.94630 -19.35338 -18.03700 -16.33309 -16.15874 -15.46710 -15.15003 -14.37098 -14.23222 -14.02773 -13.57094 -12.95943 -12.31662 -12.21756 -11.69348 -11.27328 -10.78368 -10.53830 -10.51549 -10.08633 -10.01855 -9.79695 -9.63208 -9.20550 -9.10303 -8.93186 -8.28685 -5.93844 -3.95325 0.23795 1.03220 1.36584 1.65892 3.11785 3.35737 3.42812 3.48338 3.85340 4.42827 4.53935 4.87587 5.00434 5.41966 5.45760 5.68022 5.85130 5.98614 6.44203 6.76755 6.96152 7.14230 7.23498 7.75045 7.76160 7.89507 8.07313 8.50871 9.12130 9.68346 11.17664 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.079867 B = 0.004502 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.499814 B = 6218.565439 C = 6543.308794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.149 4.149 12 C 0.427 3.573 13 O -0.448 6.448 14 C -0.024 4.024 15 C -0.210 4.210 16 S 0.135 5.865 17 C 0.036 3.964 18 N -0.419 5.419 19 H 0.259 0.741 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.188 0.812 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -21.547 0.020 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.187 4.187 12 C 0.302 3.698 13 O -0.321 6.321 14 C -0.156 4.156 15 C -0.351 4.351 16 S 0.389 5.611 17 C -0.266 4.266 18 N -0.132 5.132 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.205 0.795 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.346 -21.961 0.024 22.002 hybrid contribution 0.603 1.649 -0.005 1.756 sum 1.949 -20.312 0.019 20.405 Atomic orbital electron populations 1.69979 1.06022 1.26381 1.51281 1.25029 0.94856 0.99238 0.95465 0.86544 0.80198 0.83823 0.77503 1.19721 1.21057 1.21054 1.21324 0.93178 0.91070 1.49993 0.92580 1.19121 0.93952 0.91316 0.97274 1.21538 0.98825 0.92410 1.01308 1.22024 0.98417 0.93652 1.04588 1.22067 0.89952 0.87332 0.70457 1.90546 1.18675 1.86580 1.36309 1.21664 0.87503 0.97889 1.08560 1.27048 1.06686 0.95945 1.05453 1.83960 1.00802 1.10256 1.66067 1.29465 1.02488 0.90320 1.04317 1.66935 1.16906 1.17051 1.12268 0.93138 0.96505 0.96501 0.92900 0.92888 0.88483 0.88468 0.79495 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.86 15 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 15 10 C -0.10 -2.30 4.44 -26.74 -0.12 -2.42 15 11 C -0.15 -2.72 5.31 -27.88 -0.15 -2.87 15 12 C 0.43 7.29 7.11 -31.01 -0.22 7.07 15 13 O -0.45 -8.61 16.31 5.49 0.09 -8.52 15 14 C -0.02 -0.33 6.65 -84.43 -0.56 -0.89 15 15 C -0.21 -2.37 10.64 30.11 0.32 -2.05 15 16 S 0.14 1.05 23.18 -107.50 -2.49 -1.45 15 17 C 0.04 0.31 12.45 51.46 0.64 0.95 15 18 N -0.42 -5.44 10.28 -11.01 -0.11 -5.55 15 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 20 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 21 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 22 H 0.05 1.20 8.10 -51.93 -0.42 0.78 15 23 H 0.05 1.20 8.10 -51.93 -0.42 0.78 15 24 H 0.10 1.70 8.14 -51.93 -0.42 1.28 15 25 H 0.10 1.71 8.14 -51.93 -0.42 1.28 15 26 H 0.19 1.92 8.02 -52.49 -0.42 1.50 15 27 H 0.21 0.98 8.06 -52.48 -0.42 0.56 15 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -33.49 260.96 -6.42 -39.91 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: -2.92 Total: -4.91 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.64 Total: -13.86 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.62 Total: -32.40 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.49 -6.42 -39.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734229.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.691 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds