Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47404 * 300.00498 * 3 2 1 6 6 H 1.48499 * 109.47413 * 60.00563 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21353 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.46440 * 119.99873 * 179.72534 * 12 11 10 15 15 C 1.36506 * 122.71936 * 180.02562 * 14 12 11 16 16 S 1.71007 * 108.91966 * 179.97438 * 15 14 12 17 17 C 1.75930 * 90.71969 * 0.28406 * 16 15 14 18 18 N 1.28718 * 109.80798 * 359.82931 * 17 16 15 19 19 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46987 * 59.99475 * 9 7 2 21 21 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 22 22 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 23 23 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 24 24 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 25 25 H 1.09000 * 109.47665 * 300.00216 * 11 10 9 26 26 H 1.08002 * 125.54170 * 0.03394 * 15 14 12 27 27 H 1.08003 * 125.09287 * 179.82957 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0031 13 8 3.6526 -5.9109 -0.0043 14 6 1.9713 -7.5132 0.0032 15 6 2.8081 -8.5917 0.0024 16 16 1.8699 -10.0214 0.0116 17 6 0.3870 -9.0748 0.0075 18 7 0.6709 -7.8193 0.0034 19 1 -0.4850 0.8400 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8898 22 1 2.8726 -3.6047 0.8877 23 1 2.8712 -3.6040 -0.8922 24 1 0.8525 -5.0447 -0.8905 25 1 0.8544 -5.0450 0.8894 26 1 3.8872 -8.5490 -0.0023 27 1 -0.6119 -9.4855 0.0082 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259734229.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = -33.485026 kcal Electronic energy + Delta-G solvation = -12433.640471 eV Core-core repulsion = 10089.017405 eV Total energy + Delta-G solvation = -2344.623066 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31314 -39.47911 -36.18429 -34.06834 -31.71040 -30.17608 -27.30795 -25.41955 -23.49112 -21.74090 -20.29638 -19.15996 -18.37706 -17.25435 -16.82833 -16.59991 -16.11119 -15.50403 -15.32609 -14.48571 -14.32472 -14.29299 -13.77970 -13.13835 -13.02759 -12.65647 -12.53453 -12.37088 -11.59321 -11.58259 -11.29990 -10.86320 -10.80041 -10.68647 -10.56533 -9.87690 -8.21090 -6.32079 -0.62630 0.32678 0.59914 0.63082 1.38723 1.39243 1.53261 2.04909 2.40392 2.88962 3.11399 3.46104 3.98611 4.15433 4.23047 4.24745 4.44523 4.74292 4.93499 5.00461 5.10687 5.16505 5.50937 5.71674 5.84144 6.21259 6.25070 6.64383 6.83669 7.36713 8.90954 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.079867 B = 0.004502 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.499814 B = 6218.565439 C = 6543.308794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.090 4.090 11 C -0.142 4.142 12 C 0.432 3.568 13 O -0.481 6.481 14 C -0.056 4.056 15 C -0.219 4.219 16 S 0.230 5.770 17 C 0.038 3.962 18 N -0.459 5.459 19 H 0.265 0.735 20 H -0.002 1.002 21 H -0.002 1.002 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.192 0.808 27 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -23.247 0.027 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.180 4.180 12 C 0.310 3.690 13 O -0.358 6.358 14 C -0.188 4.188 15 C -0.362 4.362 16 S 0.486 5.514 17 C -0.263 4.263 18 N -0.172 5.172 19 H 0.074 0.926 20 H 0.016 0.984 21 H 0.016 0.984 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.209 0.791 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.436 -23.693 0.031 23.736 hybrid contribution 0.512 1.999 -0.007 2.064 sum 1.947 -21.693 0.024 21.780 Atomic orbital electron populations 1.70093 1.07649 1.27788 1.51587 1.25977 0.95861 1.03303 0.94628 0.85384 0.78874 0.78672 0.78027 1.19024 1.20023 1.20013 1.21722 0.93410 0.92640 1.50730 0.92767 1.19009 0.94213 0.92581 0.95332 1.21276 0.97804 0.93190 1.00466 1.21858 0.98503 0.92418 1.05197 1.21927 0.88980 0.88757 0.69386 1.90522 1.19531 1.87334 1.38379 1.21141 0.88793 0.96554 1.12329 1.27306 1.07433 0.97551 1.03861 1.83685 0.98068 1.06512 1.63166 1.30164 1.04841 0.89523 1.01782 1.66909 1.16429 1.19471 1.14418 0.92631 0.98374 0.98368 0.93675 0.93664 0.87937 0.87922 0.79088 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.80 15 2 C 0.00 0.00 5.46 84.65 0.46 0.47 15 3 Si 0.97 46.02 29.54 68.60 2.03 48.05 15 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 7 C -0.55 -33.08 9.11 25.60 0.23 -32.85 15 8 H 0.05 3.21 7.74 -2.91 -0.02 3.19 15 9 C 0.03 1.44 4.97 29.85 0.15 1.58 15 10 C -0.09 -4.17 4.44 30.59 0.14 -4.03 15 11 C -0.14 -5.36 5.31 29.85 0.16 -5.21 15 12 C 0.43 15.09 7.11 27.82 0.20 15.29 15 13 O -0.48 -19.06 16.31 -3.26 -0.05 -19.11 15 14 C -0.06 -1.54 6.65 40.61 0.27 -1.27 15 15 C -0.22 -4.57 10.64 67.42 0.72 -3.86 15 16 S 0.23 2.72 23.18 -56.49 -1.31 1.41 15 17 C 0.04 0.54 12.45 130.70 1.63 2.17 15 18 N -0.46 -11.29 10.28 -188.74 -1.94 -13.23 15 19 H 0.26 15.37 8.31 -92.71 -0.77 14.60 15 20 H 0.00 -0.13 8.14 -2.38 -0.02 -0.14 15 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 22 H 0.04 2.13 8.10 -2.38 -0.02 2.11 15 23 H 0.04 2.13 8.10 -2.39 -0.02 2.11 15 24 H 0.10 3.72 8.14 -2.38 -0.02 3.70 15 25 H 0.10 3.72 8.14 -2.39 -0.02 3.71 15 26 H 0.19 3.69 8.02 -2.91 -0.02 3.67 15 27 H 0.25 1.25 8.06 -2.91 -0.02 1.22 15 Total: -1.00 -73.88 260.96 4.12 -69.76 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: 1.16 Total: -1.35 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.95 Total: -27.71 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.66 Total: -71.03 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Total: -73.88 4.12 -69.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734229.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.274 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds