Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30561 * 1 3 3 Si 1.86804 * 120.00548 * 2 1 4 4 H 1.48493 * 109.47000 * 270.00395 * 3 2 1 5 5 H 1.48501 * 109.46579 * 30.00071 * 3 2 1 6 6 H 1.48499 * 109.47172 * 150.00141 * 3 2 1 7 7 C 1.40303 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.41291 * 120.00185 * 359.97438 * 7 2 1 10 10 N 1.33896 * 120.68786 * 0.25972 * 9 7 2 11 11 C 1.32041 * 120.91236 * 180.27283 * 10 9 7 12 12 O 1.35312 * 118.79566 * 179.72773 * 11 10 9 13 13 N 1.32539 * 122.40742 * 359.74363 * 11 10 9 14 14 C 1.32803 * 121.27779 * 359.97438 * 13 11 10 15 15 N 1.37858 * 120.54460 * 179.97438 * 14 13 11 16 16 C 1.41119 * 118.90746 * 359.97438 * 14 13 11 17 17 C 1.46782 * 121.06140 * 180.02562 * 16 14 13 18 18 O 1.21585 * 120.00428 * 90.00093 * 17 16 14 19 19 O 1.34859 * 120.00175 * 269.99861 * 17 16 14 20 20 H 0.97004 * 119.99451 * 359.97438 * 1 2 3 21 21 H 0.96697 * 114.00096 * 270.01284 * 12 11 10 22 22 H 0.96998 * 119.99854 * 180.02562 * 15 14 13 23 23 H 0.96997 * 120.00478 * 0.02648 * 15 14 13 24 24 H 0.96700 * 117.00381 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.4872 2.0463 -1.4000 5 1 1.4372 2.6526 0.7001 6 1 3.5373 1.4400 0.7000 7 6 2.0070 -1.2151 -0.0005 8 1 3.0871 -1.2151 -0.0010 9 6 1.3005 -2.4387 -0.0005 10 7 -0.0383 -2.4547 -0.0052 11 6 -0.7031 -3.5956 0.0001 12 8 -2.0558 -3.5618 0.0007 13 7 -0.0938 -4.7726 0.0053 14 6 1.2311 -4.8633 0.0049 15 7 1.8490 -6.0956 0.0108 16 6 1.9960 -3.6774 -0.0018 17 6 3.4631 -3.7224 -0.0032 18 8 4.0697 -3.7463 -1.0566 19 8 4.1384 -3.7373 1.1641 20 1 -0.4849 0.8401 0.0004 21 1 -2.4485 -3.5478 0.8842 22 1 2.8173 -6.1526 0.0108 23 1 1.3156 -6.9057 0.0150 24 1 5.1035 -3.7668 1.1126 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764096.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -118.376385 kcal Electronic energy + Delta-G solvation = -15310.370679 eV Core-core repulsion = 12415.773233 eV Total energy + Delta-G solvation = -2894.597446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.51981 -40.38656 -38.08268 -36.79212 -36.69650 -34.99368 -32.92583 -31.05846 -28.61271 -25.38865 -23.68818 -22.57036 -20.38816 -19.36462 -18.95449 -18.72691 -17.82598 -17.21848 -16.85760 -16.27234 -16.05160 -15.52297 -14.65895 -14.58030 -14.25835 -13.17050 -13.14604 -13.07541 -12.53171 -12.40676 -12.30356 -12.24698 -11.96708 -11.25592 -11.08115 -10.33894 -9.55960 -9.09908 -8.51188 -7.00336 0.39055 1.05335 1.28120 1.38634 1.53326 1.56097 2.14878 2.29365 2.58720 2.68354 3.11003 3.60855 4.21453 4.51001 4.85948 4.97476 4.99412 5.34100 5.64617 5.82455 6.20241 6.22444 6.49233 6.56635 6.91447 7.17977 7.24830 7.98825 8.19953 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.013474 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.522354 B = 2077.594435 C = 3148.691016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.252 1.252 7 C -0.422 4.422 8 H 0.090 0.910 9 C 0.298 3.702 10 N -0.563 5.563 11 C 0.517 3.483 12 O -0.475 6.475 13 N -0.675 5.675 14 C 0.493 3.507 15 N -0.824 5.824 16 C -0.440 4.440 17 C 0.585 3.415 18 O -0.553 6.553 19 O -0.508 6.508 20 H 0.292 0.708 21 H 0.417 0.583 22 H 0.410 0.590 23 H 0.413 0.587 24 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -2.529 4.123 6.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.202 4.202 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.175 1.175 7 C -0.453 4.453 8 H 0.108 0.892 9 C 0.173 3.827 10 N -0.297 5.297 11 C 0.208 3.792 12 O -0.280 6.280 13 N -0.421 5.421 14 C 0.249 3.751 15 N -0.370 5.370 16 C -0.454 4.454 17 C 0.429 3.571 18 O -0.444 6.444 19 O -0.320 6.320 20 H 0.104 0.896 21 H 0.276 0.724 22 H 0.241 0.759 23 H 0.244 0.756 24 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.757 -2.290 3.285 4.861 hybrid contribution 1.543 0.080 0.335 1.581 sum 4.300 -2.210 3.619 6.039 Atomic orbital electron populations 1.70076 1.09042 1.30671 1.24314 1.27158 0.95899 1.04838 0.92311 0.85045 0.79191 0.74816 0.79859 1.18634 1.17990 1.17521 1.20065 0.94734 0.90014 1.40528 0.89160 1.18482 0.86804 0.91263 0.86190 1.68908 1.08391 1.26528 1.25886 1.20383 0.85666 0.84044 0.89060 1.84500 1.12819 1.95587 1.35061 1.67098 1.08666 1.29665 1.36679 1.17710 0.87136 0.85626 0.84614 1.41727 1.09349 1.03823 1.82088 1.19583 0.90342 0.95595 1.39854 1.20165 0.87806 0.68637 0.80472 1.90782 1.71244 1.48185 1.34186 1.84804 1.27334 1.85033 1.34824 0.89642 0.72358 0.75924 0.75561 0.72052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.78 11.52 21.88 0.25 -36.53 14 2 C 0.02 1.19 5.50 85.38 0.47 1.66 14 3 Si 0.99 35.74 29.56 68.60 2.03 37.77 14 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 5 H -0.26 -8.51 7.11 99.48 0.71 -7.81 14 6 H -0.25 -8.73 7.11 99.48 0.71 -8.03 14 7 C -0.42 -22.37 8.85 23.52 0.21 -22.16 14 8 H 0.09 4.57 6.98 -2.91 -0.02 4.55 14 9 C 0.30 16.49 6.61 40.53 0.27 16.76 14 10 N -0.56 -31.39 8.05 -306.56 -2.47 -33.86 14 11 C 0.52 26.30 8.67 180.59 1.57 27.86 14 12 O -0.48 -20.64 13.63 -85.99 -1.17 -21.81 14 13 N -0.68 -32.41 10.46 -310.54 -3.25 -35.66 14 14 C 0.49 22.41 7.83 133.82 1.05 23.46 14 15 N -0.82 -27.67 8.97 -54.65 -0.49 -28.16 14 16 C -0.44 -21.89 5.85 -19.39 -0.11 -22.00 14 17 C 0.58 25.49 5.33 70.06 0.37 25.86 14 18 O -0.55 -25.85 17.90 19.56 0.35 -25.50 14 19 O -0.51 -17.40 13.44 -57.72 -0.78 -18.18 14 20 H 0.29 13.16 8.29 -92.70 -0.77 12.39 14 21 H 0.42 13.24 9.06 -74.06 -0.67 12.57 14 22 H 0.41 12.17 7.77 -92.71 -0.72 11.45 14 23 H 0.41 11.58 8.95 -92.71 -0.83 10.75 14 24 H 0.42 9.12 9.11 -74.06 -0.67 8.45 14 Total: -1.00 -71.45 233.66 -3.27 -74.72 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -1.56 Total: 35.77 kcal Atomic # 6 Polarization: 47.63 SS G_CDS: 3.82 Total: 51.45 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.95 Total: -134.21 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -1.60 Total: -65.49 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -71.45 -3.27 -74.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764096.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.661 kcal (2) G-P(sol) polarization free energy of solvation -71.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds