Wall clock time and date at job start Mon Mar 30 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29476 * 124.67533 * 2 1 4 4 C 1.30774 * 117.50611 * 179.97438 * 3 2 1 5 5 C 1.50704 * 123.06528 * 179.97438 * 4 3 2 6 6 C 1.37190 * 113.86300 * 0.02562 * 4 3 2 7 7 C 1.41382 * 126.19866 * 180.02562 * 6 4 3 8 8 O 1.21420 * 119.99990 * 359.97438 * 7 6 4 9 9 C 1.50705 * 120.00276 * 179.97438 * 7 6 4 10 10 C 1.50696 * 109.46994 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00529 * 359.97438 * 10 9 7 12 12 C 1.37881 * 119.99877 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99627 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00294 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47582 * 119.99764 * 14 12 10 17 17 H 1.48500 * 109.47073 * 239.99900 * 14 12 10 18 18 S 1.70917 * 124.68041 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47054 * 90.02394 * 1 2 3 20 20 H 1.08998 * 109.47131 * 210.02269 * 1 2 3 21 21 H 1.09000 * 109.47194 * 330.02240 * 1 2 3 22 22 H 1.09000 * 109.47095 * 90.02348 * 5 4 3 23 23 H 1.09002 * 109.47033 * 210.02372 * 5 4 3 24 24 H 1.08998 * 109.46959 * 330.02472 * 5 4 3 25 25 H 1.09001 * 109.46917 * 300.00271 * 9 7 6 26 26 H 1.09001 * 109.46513 * 60.00081 * 9 7 6 27 27 H 0.96999 * 119.99494 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2437 1.0648 0.0000 4 6 3.5412 0.9016 0.0005 5 6 4.5146 2.0521 0.0000 6 6 3.9353 -0.4125 0.0004 7 6 5.2680 -0.8845 0.0014 8 8 6.1913 -0.0961 0.0020 9 6 5.5426 -2.3664 0.0018 10 6 7.0311 -2.6014 0.0022 11 1 7.7104 -1.7618 0.0018 12 6 7.5258 -3.8884 0.0020 13 7 6.6985 -4.9108 0.0020 14 14 9.3709 -4.1798 0.0033 15 1 10.0782 -2.8741 0.0037 16 1 9.7498 -4.9490 1.2157 17 1 9.7515 -4.9480 -1.2092 18 16 2.4796 -1.4055 0.0006 19 1 -0.3633 -0.0004 -1.0276 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5135 22 1 4.7493 2.3299 1.0276 23 1 5.4287 1.7543 -0.5137 24 1 4.0699 2.9040 -0.5142 25 1 5.1028 -2.8171 0.8915 26 1 5.1041 -2.8172 -0.8885 27 1 7.0466 -5.8162 0.0015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259836415.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:51 Heat of formation + Delta-G solvation = -28.551149 kcal Electronic energy + Delta-G solvation = -12863.641951 eV Core-core repulsion = 10519.232834 eV Total energy + Delta-G solvation = -2344.409117 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36168 -39.71227 -35.16209 -33.94268 -31.76279 -30.17755 -29.34257 -25.80295 -23.92685 -22.37111 -19.71238 -18.87831 -18.36985 -16.86251 -16.63271 -16.58369 -15.59873 -15.40800 -14.91919 -14.40645 -14.17476 -14.13598 -13.45555 -13.25687 -13.18662 -12.94537 -12.82030 -12.62637 -12.36487 -12.06729 -11.49835 -10.91498 -10.67559 -10.50256 -10.33275 -9.70823 -8.27789 -6.36840 -0.94312 0.22991 0.64590 1.22686 1.38200 1.38826 1.53677 1.93340 2.38531 2.97068 3.06914 3.51476 3.91003 3.93813 4.55030 4.62523 4.65097 4.68676 4.75091 4.86617 5.06782 5.11050 5.16819 5.30774 5.68318 6.05143 6.53962 6.71524 6.78523 7.32385 8.84662 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.044978 B = 0.007302 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.382960 B = 3833.893511 C = 4430.528913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 N -0.505 5.505 4 C 0.150 3.850 5 C -0.086 4.086 6 C -0.367 4.367 7 C 0.425 3.575 8 O -0.480 6.480 9 C -0.017 4.017 10 C -0.543 4.543 11 H 0.060 0.940 12 C 0.010 3.990 13 N -0.924 5.924 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.272 1.272 18 S 0.213 5.787 19 H 0.111 0.889 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 7.757 -0.031 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.208 4.208 3 N -0.222 5.222 4 C 0.010 3.990 5 C -0.145 4.145 6 C -0.489 4.489 7 C 0.306 3.694 8 O -0.360 6.360 9 C -0.054 4.054 10 C -0.581 4.581 11 H 0.078 0.922 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.197 1.197 18 S 0.472 5.528 19 H 0.129 0.871 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.106 0.894 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.562 7.330 -0.029 15.416 hybrid contribution 1.631 0.159 0.009 1.638 sum -11.931 7.489 -0.021 14.087 Atomic orbital electron populations 1.20817 0.81113 1.06172 1.05948 1.28429 1.04014 0.91114 0.97276 1.66080 1.04104 1.32353 1.19636 1.21479 0.90780 0.93677 0.93095 1.20644 0.96235 0.93615 1.04009 1.25383 1.01128 0.98270 1.24104 1.20647 0.85609 0.92896 0.70262 1.90355 1.47534 1.59199 1.38940 1.19433 0.98292 0.89262 0.98455 1.21425 0.92242 0.92874 1.51563 0.92225 1.25833 1.03208 0.95543 0.94276 1.70049 1.36361 0.99017 1.50939 0.85390 0.79253 0.78146 0.78241 1.19670 1.19734 1.19739 1.83961 0.94444 1.09899 1.64526 0.87053 0.87379 0.87901 0.89414 0.90152 0.88744 0.94046 0.94081 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.46 71.24 0.74 -0.35 15 2 C 0.06 1.64 7.37 88.46 0.65 2.29 15 3 N -0.51 -15.53 10.48 -177.27 -1.86 -17.38 15 4 C 0.15 5.26 6.85 42.47 0.29 5.56 15 5 C -0.09 -2.71 9.68 71.24 0.69 -2.02 15 6 C -0.37 -14.44 6.28 22.80 0.14 -14.30 15 7 C 0.42 20.38 6.93 26.46 0.18 20.56 15 8 O -0.48 -24.65 13.29 -3.46 -0.05 -24.70 15 9 C -0.02 -0.93 4.81 29.10 0.14 -0.79 15 10 C -0.54 -32.37 8.92 25.60 0.23 -32.14 15 11 H 0.06 3.67 6.75 -2.91 -0.02 3.65 15 12 C 0.01 0.59 5.46 84.65 0.46 1.05 15 13 N -0.92 -54.65 13.29 21.45 0.28 -54.37 15 14 Si 0.97 45.37 29.54 68.60 2.03 47.40 15 15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 15 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 18 S 0.21 6.45 22.56 -56.49 -1.27 5.17 15 19 H 0.11 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.10 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.08 2.88 6.02 -2.39 -0.01 2.86 15 24 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.04 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 Total: -1.00 -69.72 255.32 3.85 -65.87 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: 1.18 Total: -1.85 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 3.53 Total: -20.15 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.57 Total: -71.75 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -1.27 Total: 5.17 kcal Total: -69.72 3.85 -65.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836415.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.320 kcal (2) G-P(sol) polarization free energy of solvation -69.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds