Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48508 * 109.46996 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.47417 * 30.00248 * 3 2 1 6 6 H 1.48499 * 109.47069 * 150.00290 * 3 2 1 7 7 C 1.40247 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.39906 * 119.99905 * 359.97438 * 7 2 1 10 10 N 1.31861 * 125.55732 * 0.02562 * 9 7 2 11 11 C 1.30452 * 115.68931 * 179.97438 * 10 9 7 12 12 C 1.34851 * 115.79932 * 0.02562 * 11 10 9 13 13 C 1.50701 * 125.38798 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.74624 * 359.30107 * 13 12 11 15 15 C 1.55300 * 110.84797 * 122.77046 * 13 12 11 16 16 C 1.55207 * 100.82462 * 152.18360 * 15 13 12 17 17 O 1.43646 * 105.25972 * 323.81408 * 16 15 13 18 18 C 1.43237 * 109.96946 * 24.28728 * 17 16 15 19 19 S 1.71038 * 109.23175 * 359.97438 * 12 11 10 20 20 H 0.96998 * 119.99854 * 0.02562 * 1 2 3 21 21 H 1.08001 * 122.09970 * 180.02562 * 11 10 9 22 22 H 1.09007 * 111.12775 * 270.24021 * 15 13 12 23 23 H 1.08997 * 111.13025 * 34.40671 * 15 13 12 24 24 H 1.09005 * 110.36951 * 204.79804 * 16 15 13 25 25 H 1.08993 * 110.13053 * 82.71131 * 16 15 13 26 26 H 1.08996 * 109.82710 * 238.77394 * 18 17 16 27 27 H 1.09004 * 109.90516 * 117.84406 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4002 5 1 1.4385 2.6527 0.7001 6 1 3.5385 1.4402 0.7000 7 6 2.0082 -1.2146 -0.0005 8 1 3.0883 -1.2145 -0.0010 9 6 1.3087 -2.4262 -0.0005 10 7 -0.0037 -2.5539 -0.0005 11 6 -0.4527 -3.7787 -0.0011 12 6 0.4852 -4.7476 -0.0010 13 6 0.2095 -6.2292 -0.0021 14 1 -0.8633 -6.4223 0.0095 15 6 0.8815 -6.9155 -1.2224 16 6 1.1092 -8.3455 -0.6636 17 8 1.4389 -8.1618 0.7224 18 6 0.9047 -6.9183 1.1916 19 16 2.0374 -4.0292 -0.0009 20 1 -0.4850 0.8400 -0.0004 21 1 -1.5092 -4.0027 -0.0015 22 1 0.2129 -6.9287 -2.0832 23 1 1.8287 -6.4365 -1.4702 24 1 1.9329 -8.8308 -1.1873 25 1 0.1981 -8.9357 -0.7607 26 1 1.7110 -6.2869 1.5648 27 1 0.1809 -7.1015 1.9858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -24.460927 kcal Electronic energy + Delta-G solvation = -13013.749141 eV Core-core repulsion = 10669.517389 eV Total energy + Delta-G solvation = -2344.231752 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.96296 -37.39539 -33.94702 -32.35468 -29.49821 -28.43927 -25.67109 -22.76344 -21.98911 -20.63456 -19.50883 -16.87827 -16.54370 -15.72386 -15.28302 -14.86116 -14.27781 -13.77801 -12.87704 -12.74579 -12.66267 -12.41618 -11.62408 -11.44273 -11.32100 -11.05911 -10.92704 -10.64872 -10.60630 -10.29991 -9.66818 -9.54147 -9.19043 -7.70056 -7.65398 -7.49182 -6.78552 -4.69907 2.42124 2.93465 2.97214 3.01196 3.24699 3.64479 3.78282 4.25645 4.33694 5.06607 5.19983 5.29455 5.43660 5.55703 5.70314 5.96392 6.14171 6.19025 6.21844 6.39472 6.42339 6.68603 6.78210 7.17481 7.33971 7.52149 7.90052 8.16227 8.49583 9.85991 10.00439 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.071350 B = 0.006810 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.337379 B = 4110.771790 C = 4282.613661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.381 4.381 8 H 0.095 0.905 9 C 0.231 3.769 10 N -0.540 5.540 11 C 0.110 3.890 12 C -0.394 4.394 13 C -0.005 4.005 14 H 0.077 0.923 15 C -0.150 4.150 16 C 0.050 3.950 17 O -0.392 6.392 18 C 0.053 3.947 19 S -0.084 6.084 20 H 0.283 0.717 21 H 0.128 0.872 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -5.125 -1.131 5.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.162 4.162 3 Si 0.745 3.255 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.423 4.423 8 H 0.113 0.887 9 C -0.019 4.019 10 N -0.258 5.258 11 C -0.051 4.051 12 C -0.518 4.518 13 C -0.026 4.026 14 H 0.095 0.905 15 C -0.188 4.188 16 C -0.026 4.026 17 O -0.312 6.312 18 C -0.023 4.023 19 S 0.172 5.828 20 H 0.094 0.906 21 H 0.146 0.854 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.734 -5.092 -0.997 5.471 hybrid contribution -0.873 0.574 -0.156 1.057 sum 0.861 -4.518 -1.153 4.742 Atomic orbital electron populations 1.70003 1.07532 1.29192 1.25568 1.26140 0.95098 1.01244 0.93714 0.86070 0.80357 0.79455 0.79636 1.18951 1.19699 1.18065 1.19090 0.94809 0.88158 1.40265 0.88672 1.24145 0.89896 0.92830 0.95004 1.67714 1.09627 1.18697 1.29793 1.21496 0.98660 0.88105 0.96829 1.23298 0.95721 0.96943 1.35801 1.20455 0.98757 0.90598 0.92781 0.90489 1.23436 1.02121 0.94575 0.98667 1.23371 0.99703 0.97023 0.82509 1.88328 1.77860 1.39723 1.25261 1.23393 0.97930 0.84329 0.96692 1.83010 1.11900 1.07123 1.80797 0.90565 0.85445 0.90519 0.90177 0.90431 0.92868 0.90738 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.91 11.87 55.56 0.66 -17.25 15 2 C 0.07 1.65 5.50 -17.28 -0.10 1.55 15 3 Si 0.92 17.30 29.56 -169.99 -5.03 12.27 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 7 C -0.38 -9.70 9.40 -38.20 -0.36 -10.06 15 8 H 0.10 2.23 7.85 -52.48 -0.41 1.82 15 9 C 0.23 6.19 7.07 -16.92 -0.12 6.07 15 10 N -0.54 -14.85 8.76 -13.17 -0.12 -14.97 15 11 C 0.11 2.70 11.14 -19.34 -0.22 2.48 15 12 C -0.39 -8.85 5.15 -35.51 -0.18 -9.04 15 13 C 0.00 -0.09 3.40 -89.83 -0.31 -0.39 15 14 H 0.08 1.32 8.13 -51.93 -0.42 0.90 15 15 C -0.15 -2.47 6.62 -24.34 -0.16 -2.63 15 16 C 0.05 0.74 7.78 38.33 0.30 1.04 15 17 O -0.39 -6.97 11.36 -35.23 -0.40 -7.37 15 18 C 0.05 0.96 7.37 37.88 0.28 1.24 15 19 S -0.08 -1.97 21.78 -107.50 -2.34 -4.31 15 20 H 0.28 6.44 8.29 -40.82 -0.34 6.10 15 21 H 0.13 2.81 8.06 -52.49 -0.42 2.39 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.08 1.44 7.49 -51.93 -0.39 1.06 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.07 1.47 7.18 -51.93 -0.37 1.10 15 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 LS Contribution 247.64 15.07 3.73 3.73 Total: -1.00 -28.31 247.64 -7.19 -35.50 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.84 Total: 2.13 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.86 Total: -9.73 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.54 Total: -32.22 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.40 Total: -7.37 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.34 Total: -4.31 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.31 -7.19 -35.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.043 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds