Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48508 * 109.46996 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.47417 * 30.00248 * 3 2 1 6 6 H 1.48499 * 109.47069 * 150.00290 * 3 2 1 7 7 C 1.40247 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.39906 * 119.99905 * 359.97438 * 7 2 1 10 10 N 1.31861 * 125.55732 * 0.02562 * 9 7 2 11 11 C 1.30452 * 115.68931 * 179.97438 * 10 9 7 12 12 C 1.34851 * 115.79932 * 0.02562 * 11 10 9 13 13 C 1.50701 * 125.38798 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.74624 * 359.30107 * 13 12 11 15 15 C 1.55300 * 110.84797 * 122.77046 * 13 12 11 16 16 C 1.55207 * 100.82462 * 152.18360 * 15 13 12 17 17 O 1.43646 * 105.25972 * 323.81408 * 16 15 13 18 18 C 1.43237 * 109.96946 * 24.28728 * 17 16 15 19 19 S 1.71038 * 109.23175 * 359.97438 * 12 11 10 20 20 H 0.96998 * 119.99854 * 0.02562 * 1 2 3 21 21 H 1.08001 * 122.09970 * 180.02562 * 11 10 9 22 22 H 1.09007 * 111.12775 * 270.24021 * 15 13 12 23 23 H 1.08997 * 111.13025 * 34.40671 * 15 13 12 24 24 H 1.09005 * 110.36951 * 204.79804 * 16 15 13 25 25 H 1.08993 * 110.13053 * 82.71131 * 16 15 13 26 26 H 1.08996 * 109.82710 * 238.77394 * 18 17 16 27 27 H 1.09004 * 109.90516 * 117.84406 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4002 5 1 1.4385 2.6527 0.7001 6 1 3.5385 1.4402 0.7000 7 6 2.0082 -1.2146 -0.0005 8 1 3.0883 -1.2145 -0.0010 9 6 1.3087 -2.4262 -0.0005 10 7 -0.0037 -2.5539 -0.0005 11 6 -0.4527 -3.7787 -0.0011 12 6 0.4852 -4.7476 -0.0010 13 6 0.2095 -6.2292 -0.0021 14 1 -0.8633 -6.4223 0.0095 15 6 0.8815 -6.9155 -1.2224 16 6 1.1092 -8.3455 -0.6636 17 8 1.4389 -8.1618 0.7224 18 6 0.9047 -6.9183 1.1916 19 16 2.0374 -4.0292 -0.0009 20 1 -0.4850 0.8400 -0.0004 21 1 -1.5092 -4.0027 -0.0015 22 1 0.2129 -6.9287 -2.0832 23 1 1.8287 -6.4365 -1.4702 24 1 1.9329 -8.8308 -1.1873 25 1 0.1981 -8.9357 -0.7607 26 1 1.7110 -6.2869 1.5648 27 1 0.1809 -7.1015 1.9858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -42.356652 kcal Electronic energy + Delta-G solvation = -13014.525158 eV Core-core repulsion = 10669.517389 eV Total energy + Delta-G solvation = -2345.007768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38393 -39.23878 -35.74348 -33.90234 -31.03653 -30.08140 -27.43768 -24.60942 -23.29318 -22.16485 -21.34698 -18.55950 -18.30202 -17.25690 -16.75822 -16.53317 -15.69031 -15.32622 -14.59515 -14.51628 -14.19787 -14.04390 -13.15702 -12.97812 -12.97370 -12.55099 -12.40874 -12.21103 -12.08177 -11.85208 -11.42326 -11.25077 -10.53245 -9.61752 -9.53295 -9.39708 -8.58719 -6.60598 0.58188 1.28630 1.44521 1.51754 1.60287 1.77536 2.18859 2.50610 2.95834 3.26485 3.75368 3.91960 4.07799 4.28323 4.33305 4.35979 4.72703 4.76675 4.84516 4.94897 4.99151 5.03477 5.23416 5.34060 5.68204 6.01217 6.03999 6.30035 6.59906 7.98637 8.23121 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.071350 B = 0.006810 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.337379 B = 4110.771790 C = 4282.613661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.026 3.974 3 Si 1.004 2.996 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.249 1.249 7 C -0.409 4.409 8 H 0.106 0.894 9 C 0.195 3.805 10 N -0.576 5.576 11 C 0.078 3.922 12 C -0.374 4.374 13 C -0.011 4.011 14 H 0.097 0.903 15 C -0.146 4.146 16 C 0.052 3.948 17 O -0.405 6.405 18 C 0.059 3.941 19 S -0.073 6.073 20 H 0.292 0.708 21 H 0.145 0.855 22 H 0.095 0.905 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -5.716 -1.450 6.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.201 4.201 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.452 4.452 8 H 0.124 0.876 9 C -0.056 4.056 10 N -0.296 5.296 11 C -0.081 4.081 12 C -0.498 4.498 13 C -0.033 4.033 14 H 0.115 0.885 15 C -0.184 4.184 16 C -0.024 4.024 17 O -0.325 6.325 18 C -0.018 4.018 19 S 0.183 5.817 20 H 0.103 0.897 21 H 0.162 0.838 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.103 -5.730 -1.319 6.244 hybrid contribution -1.006 0.611 -0.073 1.179 sum 1.097 -5.119 -1.392 5.417 Atomic orbital electron populations 1.70082 1.09460 1.30790 1.26428 1.27208 0.95833 1.04709 0.92313 0.84874 0.78914 0.74048 0.79955 1.18161 1.18858 1.17191 1.19564 0.95583 0.88906 1.41115 0.87600 1.24589 0.90363 0.94479 0.96152 1.67675 1.10449 1.20408 1.31079 1.21819 0.99936 0.87919 0.98423 1.23785 0.94613 0.98879 1.32531 1.20637 1.00292 0.87974 0.94349 0.88519 1.23398 1.01246 0.95356 0.98443 1.23578 1.01862 0.96097 0.80874 1.88315 1.78206 1.39076 1.26949 1.23244 0.97347 0.84363 0.96827 1.82861 1.12517 1.05885 1.80468 0.89748 0.83766 0.88655 0.92168 0.88413 0.90219 0.93017 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.80 11.87 21.88 0.26 -38.54 15 2 C 0.03 1.25 5.50 85.35 0.47 1.72 15 3 Si 1.00 35.06 29.56 68.60 2.03 37.09 15 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 6 H -0.25 -8.26 7.11 99.48 0.71 -7.55 15 7 C -0.41 -21.19 9.40 23.16 0.22 -20.98 15 8 H 0.11 5.01 7.85 -2.91 -0.02 4.99 15 9 C 0.19 10.65 7.07 85.09 0.60 11.26 15 10 N -0.58 -32.51 8.76 -195.58 -1.71 -34.22 15 11 C 0.08 3.84 11.14 84.12 0.94 4.78 15 12 C -0.37 -16.69 5.15 24.91 0.13 -16.56 15 13 C -0.01 -0.40 3.40 -10.28 -0.03 -0.44 15 14 H 0.10 3.05 8.13 -2.38 -0.02 3.03 15 15 C -0.15 -4.47 6.62 32.14 0.21 -4.26 15 16 C 0.05 1.35 7.78 72.74 0.57 1.91 15 17 O -0.41 -13.40 11.36 -148.98 -1.69 -15.10 15 18 C 0.06 2.04 7.37 72.45 0.53 2.57 15 19 S -0.07 -3.47 21.78 -56.49 -1.23 -4.70 15 20 H 0.29 13.46 8.29 -92.71 -0.77 12.69 15 21 H 0.15 6.38 8.06 -2.91 -0.02 6.36 15 22 H 0.09 2.55 8.14 -2.38 -0.02 2.53 15 23 H 0.06 2.08 7.49 -2.39 -0.02 2.06 15 24 H 0.10 2.18 8.14 -2.38 -0.02 2.16 15 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.05 2.01 7.18 -2.39 -0.02 1.99 15 27 H 0.08 2.36 8.14 -2.38 -0.02 2.34 15 Total: -1.00 -61.62 247.64 2.46 -59.16 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.17 Total: 16.29 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.63 Total: -19.99 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.45 Total: -72.76 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.69 Total: -15.10 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.23 Total: -4.70 kcal Total: -61.62 2.46 -59.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.802 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds