Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86802 * 120.00364 * 2 1 4 4 H 1.48498 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46680 * 299.99768 * 3 2 1 6 6 H 1.48495 * 109.46763 * 59.99598 * 3 2 1 7 7 C 1.40076 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.40040 * 120.00369 * 0.02562 * 7 2 1 10 10 C 1.38589 * 126.24913 * 359.97115 * 9 7 2 11 11 N 1.30676 * 113.54695 * 179.97438 * 10 9 7 12 12 C 1.29523 * 117.63516 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.56404 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.56579 * 182.69827 * 13 12 11 15 15 C 1.54517 * 110.50933 * 60.02446 * 13 12 11 16 16 C 1.54479 * 104.06037 * 241.35273 * 15 13 12 17 17 O 1.44433 * 104.80518 * 336.02227 * 16 15 13 18 18 C 1.44422 * 105.27452 * 40.51075 * 17 16 15 19 19 S 1.70888 * 110.87316 * 0.23934 * 12 11 10 20 20 H 0.96997 * 119.99516 * 359.97438 * 1 2 3 21 21 H 1.07998 * 123.22782 * 359.96846 * 10 9 7 22 22 H 1.08991 * 110.51174 * 359.97438 * 15 13 12 23 23 H 1.08995 * 110.51247 * 122.71152 * 15 13 12 24 24 H 1.08997 * 110.37024 * 94.85221 * 16 15 13 25 25 H 1.08995 * 110.37315 * 217.18852 * 16 15 13 26 26 H 1.08995 * 110.37333 * 200.65712 * 18 17 16 27 27 H 1.08999 * 110.46531 * 78.36420 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0090 -1.2131 0.0005 8 1 3.0890 -1.2132 0.0010 9 6 1.3088 -2.4259 0.0005 10 6 -0.0689 -2.5768 0.0006 11 7 -0.4574 -3.8244 0.0001 12 6 0.4595 -4.7392 0.0000 13 6 0.1883 -6.2216 0.0000 14 1 1.1221 -6.7817 0.0480 15 6 -0.6204 -6.6239 -1.2537 16 6 -1.9348 -7.2012 -0.6831 17 8 -1.5987 -7.6329 0.6536 18 6 -0.7332 -6.6034 1.1796 19 16 2.0183 -4.0389 0.0075 20 1 -0.4849 0.8401 0.0004 21 1 -0.7555 -1.7432 0.0012 22 1 -0.8243 -5.7507 -1.8731 23 1 -0.0864 -7.3829 -1.8253 24 1 -2.7050 -6.4306 -0.6505 25 1 -2.2691 -8.0479 -1.2825 26 1 -0.1445 -6.9908 2.0110 27 1 -1.3177 -5.7406 1.4991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260047395.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -28.073665 kcal Electronic energy + Delta-G solvation = -13066.637938 eV Core-core repulsion = 10722.249526 eV Total energy + Delta-G solvation = -2344.388412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98762 -37.28180 -34.28030 -32.02448 -29.40460 -28.59573 -25.07377 -23.26089 -22.20419 -20.67024 -18.86076 -16.99496 -16.59731 -15.77357 -15.17818 -14.78291 -14.55823 -13.58701 -13.20125 -12.74549 -12.39136 -12.19215 -11.67482 -11.58500 -11.38493 -11.08394 -10.83606 -10.76912 -10.34260 -10.19751 -9.77374 -9.64592 -9.35985 -8.02884 -7.97408 -7.25671 -7.03992 -4.64046 2.33689 2.85373 2.92754 2.96460 3.15656 3.55635 3.69081 4.30945 4.43721 4.96975 5.25314 5.33786 5.50796 5.74394 5.82007 5.90735 6.11211 6.20025 6.34670 6.45956 6.62991 6.66049 7.08837 7.21727 7.38364 7.72373 8.07964 8.29566 8.59493 9.74475 9.76870 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063857 B = 0.006924 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.371112 B = 4042.842850 C = 4261.375896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.064 3.936 3 Si 0.935 3.065 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.373 4.373 8 H 0.088 0.912 9 C 0.016 3.984 10 C -0.141 4.141 11 N -0.419 5.419 12 C -0.128 4.128 13 C -0.006 4.006 14 H 0.076 0.924 15 C -0.140 4.140 16 C 0.050 3.950 17 O -0.387 6.387 18 C 0.058 3.942 19 S -0.061 6.061 20 H 0.289 0.711 21 H 0.196 0.804 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -3.582 -0.884 3.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.159 4.159 3 Si 0.758 3.242 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.411 4.411 8 H 0.106 0.894 9 C -0.106 4.106 10 C -0.295 4.295 11 N -0.130 5.130 12 C -0.396 4.396 13 C -0.029 4.029 14 H 0.095 0.905 15 C -0.179 4.179 16 C -0.027 4.027 17 O -0.306 6.306 18 C -0.020 4.020 19 S 0.190 5.810 20 H 0.101 0.899 21 H 0.212 0.788 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.894 -4.340 -0.765 4.496 hybrid contribution -0.072 1.679 -0.150 1.687 sum 0.823 -2.661 -0.916 2.932 Atomic orbital electron populations 1.69478 1.07857 1.29781 1.31737 1.26146 0.95115 1.01904 0.92745 0.85795 0.80419 0.78937 0.79047 1.18027 1.19281 1.19275 1.19103 0.95067 0.88766 1.38124 0.89399 1.23329 0.95724 0.93102 0.98407 1.23112 0.93530 0.91881 1.20985 1.65302 1.36852 1.01599 1.09269 1.24634 0.90088 0.96913 1.27951 1.20459 0.98129 0.89914 0.94357 0.90516 1.22953 0.95837 1.00962 0.98176 1.23334 0.96997 0.98700 0.83635 1.89007 1.67881 1.44867 1.28843 1.23526 0.91544 0.90873 0.96068 1.82993 1.14976 1.03793 1.79238 0.89886 0.78794 0.90069 0.91613 0.92263 0.90017 0.89906 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.35 10.18 55.56 0.57 -17.78 15 2 C 0.06 1.48 5.50 -17.27 -0.09 1.38 15 3 Si 0.94 17.04 29.56 -169.99 -5.03 12.01 15 4 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.37 -9.34 9.42 -38.22 -0.36 -9.70 15 8 H 0.09 2.07 7.85 -52.48 -0.41 1.66 15 9 C 0.02 0.42 6.30 -38.78 -0.24 0.18 15 10 C -0.14 -3.83 10.55 -17.91 -0.19 -4.02 15 11 N -0.42 -10.82 10.10 -10.84 -0.11 -10.92 15 12 C -0.13 -3.00 5.75 -13.25 -0.08 -3.07 15 13 C -0.01 -0.12 3.60 -90.20 -0.32 -0.44 15 14 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 15 C -0.14 -2.43 6.73 -25.16 -0.17 -2.60 15 16 C 0.05 0.81 7.63 37.93 0.29 1.10 15 17 O -0.39 -7.00 11.65 -35.23 -0.41 -7.41 15 18 C 0.06 1.07 7.17 37.93 0.27 1.34 15 19 S -0.06 -1.43 23.13 -107.50 -2.49 -3.91 15 20 H 0.29 6.15 8.30 -40.82 -0.34 5.81 15 21 H 0.20 5.44 5.36 -52.49 -0.28 5.16 15 22 H 0.08 1.55 7.72 -51.93 -0.40 1.15 15 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 26 H 0.08 1.38 8.14 -51.93 -0.42 0.95 15 27 H 0.07 1.44 7.57 -51.93 -0.39 1.04 15 LS Contribution 246.08 15.07 3.71 3.71 Total: -1.00 -27.21 246.08 -7.39 -34.60 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.73 Total: 5.54 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.90 Total: -15.83 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.46 Total: -28.71 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.41 Total: -7.41 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.49 Total: -3.91 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.21 -7.39 -34.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047395.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.530 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds