Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47180 * 273.64914 * 3 2 1 5 5 H 1.48505 * 109.47565 * 33.64774 * 3 2 1 6 6 H 1.48499 * 109.47427 * 153.65026 * 3 2 1 7 7 C 1.40066 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00449 * 342.54577 * 7 2 1 9 9 C 1.40046 * 119.99758 * 162.53954 * 7 2 1 10 10 C 1.38586 * 126.25621 * 340.33379 * 9 7 2 11 11 N 1.30677 * 113.55048 * 180.26118 * 10 9 7 12 12 C 1.29526 * 117.63185 * 359.97438 * 11 10 9 13 13 C 1.50698 * 124.55837 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.74986 * 181.99897 * 13 12 11 15 15 C 1.55300 * 110.84987 * 305.68781 * 13 12 11 16 16 C 1.54947 * 100.94369 * 152.32473 * 15 13 12 17 17 O 1.43639 * 105.13454 * 323.56177 * 16 15 13 18 18 C 1.43237 * 109.97353 * 24.42057 * 17 16 15 19 19 S 1.70884 * 110.87618 * 0.02562 * 12 11 10 20 20 H 0.97001 * 119.99810 * 359.97438 * 1 2 3 21 21 H 1.07995 * 123.22481 * 0.21056 * 10 9 7 22 22 H 1.09005 * 111.13118 * 270.24932 * 15 13 12 23 23 H 1.09007 * 111.12525 * 34.40557 * 15 13 12 24 24 H 1.09003 * 110.31146 * 204.64070 * 16 15 13 25 25 H 1.09004 * 110.30539 * 82.47085 * 16 15 13 26 26 H 1.09003 * 109.83180 * 238.77563 * 18 17 16 27 27 H 1.09005 * 109.82963 * 117.80713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4129 2.0910 -1.3972 5 1 1.4808 2.6293 0.7758 6 1 3.5766 1.4192 0.6214 7 6 2.0090 -1.2130 0.0005 8 1 1.5064 -2.1267 0.2815 9 6 3.3611 -1.2410 -0.3634 10 6 4.0336 -0.2739 -1.0934 11 7 5.2935 -0.5549 -1.2963 12 6 5.7477 -1.6651 -0.8074 13 6 7.1704 -2.1419 -0.9470 14 1 7.2977 -3.1191 -0.4809 15 6 7.5977 -2.1768 -2.4396 16 6 9.1269 -1.9612 -2.3129 17 8 9.2866 -1.0390 -1.2233 18 6 8.1553 -1.1151 -0.3481 19 16 4.5164 -2.5161 0.0172 20 1 -0.4850 0.8401 0.0004 21 1 3.5614 0.6255 -1.4602 22 1 7.3732 -3.1436 -2.8901 23 1 7.1319 -1.3665 -3.0006 24 1 9.5262 -1.5333 -3.2325 25 1 9.6243 -2.9043 -2.0863 26 1 7.6751 -0.1390 -0.2787 27 1 8.4746 -1.4425 0.6414 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047397.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -43.504732 kcal Electronic energy + Delta-G solvation = -13111.721092 eV Core-core repulsion = 10766.663539 eV Total energy + Delta-G solvation = -2345.057553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59758 -39.36866 -36.10015 -33.89349 -31.84013 -30.29000 -26.88816 -24.98017 -23.38452 -22.98071 -20.92226 -19.01353 -18.53419 -17.38749 -16.84607 -16.73601 -15.82679 -15.62893 -14.96401 -14.79717 -14.30438 -14.15439 -13.89120 -13.21543 -13.08438 -12.59491 -12.44552 -12.25998 -12.08554 -11.81216 -11.70981 -11.25862 -10.48594 -10.15326 -10.04092 -9.38402 -9.26107 -6.68886 0.26118 1.00459 1.20252 1.32476 1.40490 1.47224 2.00439 2.12489 2.80456 2.95130 3.62807 3.85050 3.99020 4.12181 4.28208 4.38738 4.67894 4.78232 4.79118 4.86427 4.93118 4.97874 5.03614 5.29102 5.53719 5.81954 6.00600 6.07473 6.27226 7.48890 7.76452 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.049938 B = 0.008109 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.563074 B = 3452.174416 C = 3759.182563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.066 3.934 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.017 4.017 10 C -0.209 4.209 11 N -0.429 5.429 12 C -0.099 4.099 13 C -0.017 4.017 14 H 0.108 0.892 15 C -0.139 4.139 16 C 0.053 3.947 17 O -0.405 6.405 18 C 0.069 3.931 19 S 0.003 5.997 20 H 0.311 0.689 21 H 0.139 0.861 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -2.551 -1.150 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.161 4.161 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.422 4.422 8 H 0.103 0.897 9 C -0.139 4.139 10 C -0.359 4.359 11 N -0.140 5.140 12 C -0.371 4.371 13 C -0.039 4.039 14 H 0.126 0.874 15 C -0.178 4.178 16 C -0.023 4.023 17 O -0.325 6.325 18 C -0.009 4.009 19 S 0.256 5.744 20 H 0.123 0.877 21 H 0.156 0.844 22 H 0.118 0.882 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.688 -2.956 -0.901 10.169 hybrid contribution -1.043 1.318 -0.344 1.716 sum 8.645 -1.638 -1.245 8.886 Atomic orbital electron populations 1.69590 1.08749 1.33259 1.29586 1.26740 0.95420 1.03794 0.90099 0.85405 0.79227 0.76312 0.79814 1.18692 1.18672 1.18662 1.18902 0.91382 0.96821 1.35138 0.89711 1.23327 0.97578 0.95660 0.97355 1.21396 0.90958 1.05893 1.17674 1.65032 1.14141 1.16600 1.18269 1.25388 1.00102 0.97287 1.14281 1.20955 0.86615 0.98847 0.97489 0.87380 1.23273 0.95946 1.03497 0.95079 1.23548 0.94714 0.93884 0.90148 1.88322 1.42307 1.63213 1.38616 1.23090 0.85482 0.98634 0.93707 1.82941 1.03363 1.29345 1.58759 0.87696 0.84425 0.88225 0.92080 0.88520 0.89723 0.93318 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.95 13.93 21.86 0.30 -37.65 15 2 C 0.07 3.19 5.50 85.28 0.47 3.66 15 3 Si 0.97 41.08 24.55 68.60 1.68 42.76 15 4 H -0.26 -10.92 6.75 99.48 0.67 -10.25 15 5 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 6 H -0.26 -12.14 6.56 99.48 0.65 -11.49 15 7 C -0.39 -19.93 9.92 23.15 0.23 -19.70 15 8 H 0.08 4.53 8.06 -2.91 -0.02 4.50 15 9 C -0.02 -0.87 5.85 22.79 0.13 -0.74 15 10 C -0.21 -10.66 8.88 84.95 0.75 -9.91 15 11 N -0.43 -20.92 9.97 -188.22 -1.88 -22.79 15 12 C -0.10 -4.23 5.97 88.45 0.53 -3.70 15 13 C -0.02 -0.56 3.48 -10.28 -0.04 -0.59 15 14 H 0.11 3.06 8.14 -2.38 -0.02 3.04 15 15 C -0.14 -4.03 6.60 32.05 0.21 -3.82 15 16 C 0.05 1.30 7.78 72.65 0.56 1.86 15 17 O -0.40 -12.84 11.36 -148.98 -1.69 -14.53 15 18 C 0.07 2.27 7.39 72.45 0.54 2.80 15 19 S 0.00 0.13 23.13 -56.49 -1.31 -1.18 15 20 H 0.31 13.12 8.30 -92.71 -0.77 12.36 15 21 H 0.14 6.96 4.15 -2.91 -0.01 6.95 15 22 H 0.10 2.42 8.14 -2.38 -0.02 2.41 15 23 H 0.06 2.10 7.80 -2.38 -0.02 2.09 15 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.05 1.88 7.63 -2.39 -0.02 1.87 15 27 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 Total: -1.00 -56.85 241.36 1.60 -55.25 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.09 Total: 8.26 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.39 Total: -30.12 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -1.57 Total: -60.44 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.69 Total: -14.53 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.68 Total: 42.76 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.31 Total: -1.18 kcal Total: -56.85 1.60 -55.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047397.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.744 kcal (2) G-P(sol) polarization free energy of solvation -56.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds