Wall clock time and date at job start Mon Mar 30 2020 02:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.47358 * 59.99486 * 3 2 1 7 7 C 1.40341 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.39800 * 119.99614 * 0.02562 * 7 2 1 10 10 N 1.32808 * 125.80009 * 359.97438 * 9 7 2 11 11 C 1.33064 * 108.65036 * 179.97438 * 10 9 7 12 12 C 1.35931 * 107.97995 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.32260 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.60636 * 1.11106 * 13 12 11 15 15 C 1.54388 * 109.56329 * 241.01893 * 13 12 11 16 16 C 1.55137 * 106.63512 * 192.86821 * 15 13 12 17 17 S 1.83457 * 102.38931 * 42.06860 * 16 15 13 18 18 C 1.54268 * 109.61086 * 121.44702 * 13 12 11 19 19 O 1.34603 * 107.36102 * 0.22061 * 12 11 10 20 20 H 0.96998 * 119.99784 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.01237 * 179.97438 * 11 10 9 22 22 H 1.09003 * 110.23157 * 73.52028 * 15 13 12 23 23 H 1.08999 * 109.98114 * 312.07443 * 15 13 12 24 24 H 1.09002 * 110.85765 * 283.78803 * 16 15 13 25 25 H 1.08996 * 110.85445 * 160.34805 * 16 15 13 26 26 H 1.08999 * 110.40293 * 29.08679 * 18 13 12 27 27 H 1.08995 * 110.50195 * 266.71428 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0080 -1.2153 0.0005 8 1 3.0880 -1.2153 0.0010 9 6 1.3090 -2.4260 0.0005 10 7 -0.0123 -2.5602 0.0005 11 6 -0.3082 -3.8576 0.0000 12 6 0.8590 -4.5542 0.0002 13 6 1.0032 -6.0543 0.0003 14 1 0.0163 -6.5167 -0.0198 15 6 1.7541 -6.5014 1.2730 16 6 2.1551 -7.9840 1.0543 17 16 2.7227 -7.9851 -0.6902 18 6 1.8076 -6.4972 -1.2393 19 8 1.8623 -3.6569 0.0058 20 1 -0.4850 0.8400 -0.0004 21 1 -1.3012 -4.2823 0.0002 22 1 1.1040 -6.4160 2.1438 23 1 2.6463 -5.8911 1.4128 24 1 1.2954 -8.6416 1.1832 25 1 2.9645 -8.2702 1.7259 26 1 2.5026 -5.7137 -1.5412 27 1 1.1363 -6.7459 -2.0612 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260105744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:29 Heat of formation + Delta-G solvation = 1.217462 kcal Electronic energy + Delta-G solvation = -13140.819334 eV Core-core repulsion = 10797.701081 eV Total energy + Delta-G solvation = -2343.118253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08424 -36.01601 -33.84069 -32.46623 -30.08421 -28.50371 -25.94898 -23.77945 -21.28678 -20.77553 -19.28560 -17.48964 -16.42303 -15.63679 -15.37684 -14.71634 -14.32578 -13.82322 -13.61872 -12.87412 -12.43151 -12.22077 -11.74604 -11.66707 -11.50304 -11.31174 -11.08007 -10.70265 -10.61667 -10.35209 -9.80875 -9.72202 -9.22279 -8.19614 -7.53778 -7.38782 -6.73005 -4.66604 2.03184 2.51642 2.85105 3.03163 3.09105 3.23666 3.81749 4.34095 4.53147 4.89507 4.98401 5.22554 5.29514 5.32526 5.40008 5.65722 5.90399 5.93086 6.10870 6.24430 6.38657 6.50042 6.79169 7.04675 7.64249 7.90173 8.11532 8.48800 8.72467 9.92899 10.20271 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058750 B = 0.006398 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.477654 B = 4375.043022 C = 4570.040976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.075 3.925 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.434 4.434 8 H 0.092 0.908 9 C 0.333 3.667 10 N -0.539 5.539 11 C 0.009 3.991 12 C -0.205 4.205 13 C 0.025 3.975 14 H 0.090 0.910 15 C -0.122 4.122 16 C -0.068 4.068 17 S -0.321 6.321 18 C -0.056 4.056 19 O -0.242 6.242 20 H 0.279 0.721 21 H 0.144 0.856 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -7.859 1.252 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.150 4.150 3 Si 0.750 3.250 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.110 0.890 9 C 0.150 3.850 10 N -0.269 5.269 11 C -0.138 4.138 12 C -0.261 4.261 13 C 0.005 3.995 14 H 0.109 0.891 15 C -0.161 4.161 16 C -0.216 4.216 17 S -0.095 6.095 18 C -0.204 4.204 19 O -0.138 6.138 20 H 0.090 0.910 21 H 0.161 0.839 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.943 -7.960 0.655 8.219 hybrid contribution -0.075 0.817 0.561 0.993 sum 1.868 -7.143 1.216 7.483 Atomic orbital electron populations 1.70002 1.07239 1.28603 1.29129 1.25871 0.94996 1.00840 0.93293 0.85967 0.80513 0.79873 0.78688 1.18199 1.19595 1.19610 1.18204 0.94526 0.85988 1.48208 0.88975 1.22302 0.86963 0.82980 0.92721 1.71475 1.11852 1.14323 1.29239 1.22992 0.96847 0.91663 1.02293 1.21863 0.87344 0.89879 1.27037 1.19985 0.99096 0.88758 0.91672 0.89130 1.22771 1.01852 0.92733 0.98699 1.24223 1.03547 1.00103 0.93717 1.87345 1.67369 1.40618 1.14156 1.24196 1.00420 0.95293 1.00532 1.84359 1.36624 1.16810 1.76037 0.91019 0.83855 0.89795 0.90015 0.89393 0.88381 0.88511 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.50 11.88 55.57 0.66 -18.84 15 2 C 0.08 1.92 5.50 -17.27 -0.10 1.82 15 3 Si 0.93 18.40 29.56 -169.99 -5.03 13.37 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.43 -11.81 9.45 -38.21 -0.36 -12.18 15 8 H 0.09 2.34 7.85 -52.49 -0.41 1.93 15 9 C 0.33 9.45 7.74 -16.55 -0.13 9.33 15 10 N -0.54 -15.35 9.43 -13.43 -0.13 -15.47 15 11 C 0.01 0.21 11.80 -17.85 -0.21 0.00 15 12 C -0.21 -4.62 5.82 -35.13 -0.20 -4.82 15 13 C 0.03 0.43 3.03 -90.38 -0.27 0.15 15 14 H 0.09 1.37 8.12 -51.93 -0.42 0.95 15 15 C -0.12 -1.85 5.81 -24.87 -0.14 -1.99 15 16 C -0.07 -0.86 7.36 38.29 0.28 -0.58 15 17 S -0.32 -4.91 23.26 -107.50 -2.50 -7.42 15 18 C -0.06 -0.93 6.81 37.82 0.26 -0.67 15 19 O -0.24 -6.30 10.71 3.08 0.03 -6.27 15 20 H 0.28 6.68 8.29 -40.82 -0.34 6.34 15 21 H 0.14 2.98 8.06 -52.49 -0.42 2.56 15 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.08 1.40 8.11 -51.93 -0.42 0.98 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.10 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.10 1.79 7.80 -51.93 -0.40 1.39 15 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -30.04 250.27 -6.97 -37.01 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -2.91 Total: 2.77 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.88 Total: -8.93 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.53 Total: -34.31 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.03 Total: -6.27 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -2.50 Total: -7.42 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.04 -6.97 -37.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.231 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds