Wall clock time and date at job start Mon Mar 30 2020 02:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.47358 * 59.99486 * 3 2 1 7 7 C 1.40341 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.39800 * 119.99614 * 0.02562 * 7 2 1 10 10 N 1.32808 * 125.80009 * 359.97438 * 9 7 2 11 11 C 1.33064 * 108.65036 * 179.97438 * 10 9 7 12 12 C 1.35931 * 107.97995 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.32260 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.60636 * 1.11106 * 13 12 11 15 15 C 1.54388 * 109.56329 * 241.01893 * 13 12 11 16 16 C 1.55137 * 106.63512 * 192.86821 * 15 13 12 17 17 S 1.83457 * 102.38931 * 42.06860 * 16 15 13 18 18 C 1.54268 * 109.61086 * 121.44702 * 13 12 11 19 19 O 1.34603 * 107.36102 * 0.22061 * 12 11 10 20 20 H 0.96998 * 119.99784 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.01237 * 179.97438 * 11 10 9 22 22 H 1.09003 * 110.23157 * 73.52028 * 15 13 12 23 23 H 1.08999 * 109.98114 * 312.07443 * 15 13 12 24 24 H 1.09002 * 110.85765 * 283.78803 * 16 15 13 25 25 H 1.08996 * 110.85445 * 160.34805 * 16 15 13 26 26 H 1.08999 * 110.40293 * 29.08679 * 18 13 12 27 27 H 1.08995 * 110.50195 * 266.71428 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0080 -1.2153 0.0005 8 1 3.0880 -1.2153 0.0010 9 6 1.3090 -2.4260 0.0005 10 7 -0.0123 -2.5602 0.0005 11 6 -0.3082 -3.8576 0.0000 12 6 0.8590 -4.5542 0.0002 13 6 1.0032 -6.0543 0.0003 14 1 0.0163 -6.5167 -0.0198 15 6 1.7541 -6.5014 1.2730 16 6 2.1551 -7.9840 1.0543 17 16 2.7227 -7.9851 -0.6902 18 6 1.8076 -6.4972 -1.2393 19 8 1.8623 -3.6569 0.0058 20 1 -0.4850 0.8400 -0.0004 21 1 -1.3012 -4.2823 0.0002 22 1 1.1040 -6.4160 2.1438 23 1 2.6463 -5.8911 1.4128 24 1 1.2954 -8.6416 1.1832 25 1 2.9645 -8.2702 1.7259 26 1 2.5026 -5.7137 -1.5412 27 1 1.1363 -6.7459 -2.0612 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260105744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:29 Heat of formation + Delta-G solvation = -18.725740 kcal Electronic energy + Delta-G solvation = -13141.684136 eV Core-core repulsion = 10797.701081 eV Total energy + Delta-G solvation = -2343.983055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05921 -37.39288 -35.76674 -34.47023 -31.57651 -30.20505 -27.68694 -25.21239 -23.10648 -22.52992 -20.93654 -19.46064 -17.75351 -17.46137 -16.81107 -16.60665 -15.95709 -15.34804 -14.92925 -14.65100 -13.87610 -13.66393 -13.42962 -13.04150 -12.93213 -12.79953 -12.71797 -12.49680 -11.97513 -11.87848 -11.66780 -11.15825 -11.03897 -10.19885 -9.33599 -8.73999 -8.62490 -6.68072 0.82692 1.00945 1.37724 1.40111 1.58418 1.59138 2.15892 2.43338 2.74976 3.27635 3.60316 3.71969 3.94696 4.07463 4.21146 4.27722 4.52320 4.66225 4.72828 4.75484 4.88709 4.97427 5.10851 5.15020 5.76473 5.96618 6.14930 6.50107 6.71782 7.94727 8.34075 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058750 B = 0.006398 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.477654 B = 4375.043022 C = 4570.040976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.031 3.969 3 Si 1.012 2.988 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.097 0.903 9 C 0.298 3.702 10 N -0.576 5.576 11 C -0.025 4.025 12 C -0.182 4.182 13 C 0.023 3.977 14 H 0.121 0.879 15 C -0.119 4.119 16 C -0.051 4.051 17 S -0.333 6.333 18 C -0.055 4.055 19 O -0.256 6.256 20 H 0.288 0.712 21 H 0.174 0.826 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -8.770 1.789 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.191 4.191 3 Si 0.829 3.171 4 H -0.175 1.175 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.115 0.885 9 C 0.114 3.886 10 N -0.307 5.307 11 C -0.169 4.169 12 C -0.237 4.237 13 C 0.003 3.997 14 H 0.139 0.861 15 C -0.158 4.158 16 C -0.198 4.198 17 S -0.108 6.108 18 C -0.203 4.203 19 O -0.153 6.153 20 H 0.099 0.901 21 H 0.191 0.809 22 H 0.118 0.882 23 H 0.074 0.926 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.211 -8.923 1.194 9.270 hybrid contribution -0.181 0.922 0.410 1.025 sum 2.030 -8.000 1.604 8.408 Atomic orbital electron populations 1.70083 1.09194 1.30337 1.29825 1.27011 0.95871 1.04340 0.91844 0.84736 0.78976 0.74097 0.79245 1.17454 1.18529 1.18453 1.18692 0.95112 0.86876 1.49710 0.88465 1.22779 0.87535 0.83909 0.94402 1.71377 1.12133 1.16688 1.30550 1.23494 0.98833 0.90776 1.03830 1.22837 0.86171 0.91894 1.22772 1.20301 1.01323 0.84944 0.93106 0.86138 1.22688 1.00791 0.94174 0.98118 1.24320 1.05319 0.98493 0.91690 1.87440 1.67708 1.39076 1.16536 1.24025 1.00143 0.95367 1.00752 1.84367 1.37946 1.17085 1.75902 0.90102 0.80908 0.88177 0.92592 0.86424 0.86367 0.91455 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.33 11.88 21.89 0.26 -42.07 15 2 C 0.03 1.58 5.50 85.38 0.47 2.05 15 3 Si 1.01 37.71 29.56 68.60 2.03 39.74 15 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 5 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.47 -26.35 9.45 23.16 0.22 -26.13 15 8 H 0.10 5.10 7.85 -2.91 -0.02 5.08 15 9 C 0.30 17.52 7.74 84.92 0.66 18.18 15 10 N -0.58 -33.81 9.43 -309.38 -2.92 -36.73 15 11 C -0.03 -1.24 11.80 83.97 0.99 -0.25 15 12 C -0.18 -8.17 5.82 25.15 0.15 -8.02 15 13 C 0.02 0.75 3.03 -10.64 -0.03 0.71 15 14 H 0.12 3.22 8.12 -2.39 -0.02 3.20 15 15 C -0.12 -3.32 5.81 31.80 0.18 -3.14 15 16 C -0.05 -1.10 7.36 72.71 0.54 -0.57 15 17 S -0.33 -9.46 23.26 -56.49 -1.31 -10.77 15 18 C -0.05 -1.74 6.81 72.41 0.49 -1.24 15 19 O -0.26 -13.79 10.71 -11.90 -0.13 -13.91 15 20 H 0.29 14.05 8.29 -92.71 -0.77 13.28 15 21 H 0.17 7.07 8.06 -2.91 -0.02 7.04 15 22 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.06 1.86 8.11 -2.39 -0.02 1.84 15 24 H 0.12 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.12 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.07 2.52 7.80 -2.39 -0.02 2.51 15 27 H 0.11 3.06 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -67.58 250.27 2.76 -64.81 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.17 Total: 17.35 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 3.66 Total: -18.41 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.66 Total: -78.80 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.13 Total: -13.91 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.31 Total: -10.77 kcal Total: -67.58 2.76 -64.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.087 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds