Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.31615 * 127.10313 * 244.70746 * 12 9 7 14 14 N 1.38151 * 118.84237 * 179.84358 * 13 12 9 15 15 C 1.48699 * 136.92570 * 180.13627 * 14 13 12 16 16 C 1.53727 * 103.81078 * 180.30118 * 15 14 13 17 17 N 1.46581 * 104.01630 * 359.97438 * 16 15 14 18 18 C 1.30675 * 110.10733 * 0.02562 * 17 16 15 19 19 S 1.77088 * 127.11466 * 65.01666 * 12 9 7 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 22 22 H 1.00900 * 110.99929 * 300.00420 * 11 9 7 23 23 H 1.08002 * 120.58054 * 0.02562 * 13 12 9 24 24 H 1.08996 * 110.55908 * 298.88452 * 15 14 13 25 25 H 1.09000 * 110.56042 * 61.58011 * 15 14 13 26 26 H 1.09006 * 110.51784 * 118.63699 * 16 15 14 27 27 H 1.09002 * 110.52469 * 241.36858 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 6 4.7008 -3.2152 0.9473 14 7 5.0737 -4.5332 0.7679 15 6 5.8191 -5.5654 1.5362 16 6 5.7995 -6.7949 0.6137 17 7 5.0558 -6.3422 -0.5655 18 6 4.6891 -5.0970 -0.4146 19 16 3.8080 -3.8198 -1.2828 20 1 -0.4850 0.8401 0.0004 21 1 5.0080 -0.4309 -1.1899 22 1 3.6782 -0.9580 -2.0383 23 1 4.9659 -2.6874 1.8515 24 1 6.8433 -5.2407 1.7195 25 1 5.3132 -5.7820 2.4771 26 1 6.8143 -7.0826 0.3388 27 1 5.2830 -7.6255 1.0949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260148890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 81.879130 kcal Electronic energy + Delta-G solvation = -13110.125700 eV Core-core repulsion = 10802.797950 eV Total energy + Delta-G solvation = -2307.327750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43969 -36.23708 -34.03529 -31.80560 -30.16314 -28.91845 -26.26201 -23.30575 -22.57112 -21.28532 -19.19444 -17.66093 -16.67671 -16.21068 -15.12489 -14.79547 -14.58067 -13.99933 -13.63678 -13.18514 -13.15172 -12.46740 -12.32611 -12.20845 -11.69560 -10.94112 -10.64139 -10.44111 -10.07577 -9.87723 -9.72612 -9.26509 -8.81224 -8.60248 -7.39167 -6.84961 -6.05526 -4.17318 1.24469 1.97833 2.43431 2.59002 2.92959 3.46696 3.58341 3.87659 4.33783 4.64770 4.84956 4.88988 5.19191 5.24790 5.43638 5.64910 5.70058 5.81271 5.95019 6.02652 6.54222 6.79954 7.23778 7.45411 7.72447 8.04180 8.23459 8.59728 8.95020 9.56656 11.03837 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054798 B = 0.007668 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.844032 B = 3650.842491 C = 3724.266772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.088 3.912 3 Si 0.864 3.136 4 H -0.297 1.297 5 H -0.191 1.191 6 H -0.302 1.302 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.268 3.732 10 H 0.058 0.942 11 N -0.829 5.829 12 C -0.177 4.177 13 C 0.051 3.949 14 N -0.580 5.580 15 C 0.090 3.910 16 C 0.038 3.962 17 N -0.557 5.557 18 C 0.304 3.696 19 S 0.112 5.888 20 H 0.264 0.736 21 H 0.311 0.689 22 H 0.332 0.668 23 H 0.161 0.839 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.466 -6.830 2.049 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.117 4.117 3 Si 0.691 3.309 4 H -0.224 1.224 5 H -0.113 1.113 6 H -0.230 1.230 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.156 3.844 10 H 0.075 0.925 11 N -0.358 5.358 12 C -0.301 4.301 13 C -0.075 4.075 14 N -0.290 5.290 15 C -0.035 4.035 16 C -0.095 4.095 17 N -0.292 5.292 18 C -0.077 4.077 19 S 0.356 5.644 20 H 0.074 0.926 21 H 0.122 0.878 22 H 0.146 0.854 23 H 0.178 0.822 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.363 -6.843 0.668 13.281 hybrid contribution 1.434 0.220 2.088 2.542 sum 12.796 -6.623 2.756 14.670 Atomic orbital electron populations 1.69951 1.06967 1.27483 1.48646 1.24965 0.94529 1.00006 0.92245 0.87233 0.84703 0.81116 0.77839 1.22413 1.11283 1.22974 1.20755 0.86928 0.94880 1.53959 0.90769 1.18038 0.96381 0.78986 0.90974 0.92479 1.60142 1.13061 1.56911 1.05646 1.25596 1.05064 1.03068 0.96329 1.20190 1.02490 0.82871 1.01974 1.47263 1.53339 1.10586 1.17773 1.22875 0.96655 0.87845 0.96099 1.23002 1.00084 0.96262 0.90121 1.74683 1.24397 1.06386 1.23751 1.26940 0.95984 0.95584 0.89208 1.85300 1.59746 0.99642 1.19733 0.92635 0.87778 0.85417 0.82152 0.90068 0.89940 0.89487 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.06 15 2 C 0.09 2.43 5.47 -17.82 -0.10 2.33 15 3 Si 0.86 20.49 26.94 -169.99 -4.58 15.91 15 4 H -0.30 -7.13 7.11 56.52 0.40 -6.73 15 5 H -0.19 -4.12 5.17 56.52 0.29 -3.83 15 6 H -0.30 -7.49 7.11 56.52 0.40 -7.09 15 7 C -0.53 -13.92 9.29 -34.44 -0.32 -14.24 15 8 H 0.07 2.19 7.98 -52.49 -0.42 1.77 15 9 C 0.27 5.64 2.61 -70.01 -0.18 5.46 15 10 H 0.06 1.19 7.55 -51.93 -0.39 0.80 15 11 N -0.83 -15.87 5.82 -6.65 -0.04 -15.91 15 12 C -0.18 -3.33 5.41 -36.17 -0.20 -3.52 15 13 C 0.05 0.85 11.05 -16.56 -0.18 0.67 15 14 N -0.58 -9.36 3.45 -114.95 -0.40 -9.76 15 15 C 0.09 1.08 8.08 -2.45 -0.02 1.06 15 16 C 0.04 0.48 8.02 -3.62 -0.03 0.45 15 17 N -0.56 -9.67 11.70 -60.27 -0.70 -10.37 15 18 C 0.30 5.45 8.92 -88.85 -0.79 4.66 15 19 S 0.11 2.07 23.04 -107.50 -2.48 -0.41 15 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.31 5.05 9.06 -39.29 -0.36 4.69 15 22 H 0.33 6.34 8.83 -39.29 -0.35 5.99 15 23 H 0.16 2.30 8.06 -52.49 -0.42 1.88 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 245.48 15.07 3.70 3.70 Total: -1.00 -31.06 245.48 -8.42 -39.48 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -2.87 Total: 6.56 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.82 Total: -3.14 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.37 Total: -62.10 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.58 Total: 15.91 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.48 Total: -0.41 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.06 -8.42 -39.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.359 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds