Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.31615 * 127.10313 * 244.70746 * 12 9 7 14 14 N 1.38151 * 118.84237 * 179.84358 * 13 12 9 15 15 C 1.48699 * 136.92570 * 180.13627 * 14 13 12 16 16 C 1.53727 * 103.81078 * 180.30118 * 15 14 13 17 17 N 1.46581 * 104.01630 * 359.97438 * 16 15 14 18 18 C 1.30675 * 110.10733 * 0.02562 * 17 16 15 19 19 S 1.77088 * 127.11466 * 65.01666 * 12 9 7 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 22 22 H 1.00900 * 110.99929 * 300.00420 * 11 9 7 23 23 H 1.08002 * 120.58054 * 0.02562 * 13 12 9 24 24 H 1.08996 * 110.55908 * 298.88452 * 15 14 13 25 25 H 1.09000 * 110.56042 * 61.58011 * 15 14 13 26 26 H 1.09006 * 110.51784 * 118.63699 * 16 15 14 27 27 H 1.09002 * 110.52469 * 241.36858 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 6 4.7008 -3.2152 0.9473 14 7 5.0737 -4.5332 0.7679 15 6 5.8191 -5.5654 1.5362 16 6 5.7995 -6.7949 0.6137 17 7 5.0558 -6.3422 -0.5655 18 6 4.6891 -5.0970 -0.4146 19 16 3.8080 -3.8198 -1.2828 20 1 -0.4850 0.8401 0.0004 21 1 5.0080 -0.4309 -1.1899 22 1 3.6782 -0.9580 -2.0383 23 1 4.9659 -2.6874 1.8515 24 1 6.8433 -5.2407 1.7195 25 1 5.3132 -5.7820 2.4771 26 1 6.8143 -7.0826 0.3388 27 1 5.2830 -7.6255 1.0949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260148890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 58.017044 kcal Electronic energy + Delta-G solvation = -13111.160438 eV Core-core repulsion = 10802.797950 eV Total energy + Delta-G solvation = -2308.362487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.65477 -37.71099 -35.53732 -33.77997 -31.31517 -30.20458 -28.11894 -24.72224 -23.78724 -22.72450 -20.58999 -19.21531 -18.41425 -17.28463 -16.62238 -16.34433 -16.12289 -15.56157 -15.03117 -14.55250 -14.34436 -14.14135 -13.72721 -13.30922 -13.13307 -12.77152 -12.43346 -12.04826 -11.65487 -11.38380 -11.09884 -10.97583 -10.69046 -10.15843 -8.97439 -8.17929 -8.16183 -6.31958 -0.08877 0.61931 1.10475 1.28681 1.58290 1.66911 1.75217 2.02033 2.66842 3.22021 3.28865 3.77308 3.99846 4.22390 4.24863 4.42704 4.52540 4.58473 4.69846 4.81296 5.11591 5.39497 5.55940 5.95088 6.18562 6.48081 6.50562 6.81955 7.04776 7.45828 8.95865 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054798 B = 0.007668 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.844032 B = 3650.842491 C = 3724.266772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.297 1.297 5 H -0.151 1.151 6 H -0.321 1.321 7 C -0.519 4.519 8 H 0.026 0.974 9 C 0.279 3.721 10 H 0.070 0.930 11 N -0.831 5.831 12 C -0.210 4.210 13 C 0.077 3.923 14 N -0.582 5.582 15 C 0.088 3.912 16 C 0.032 3.968 17 N -0.577 5.577 18 C 0.292 3.708 19 S 0.074 5.926 20 H 0.262 0.738 21 H 0.335 0.665 22 H 0.333 0.667 23 H 0.191 0.809 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.595 -7.090 3.137 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.225 1.225 5 H -0.071 1.071 6 H -0.249 1.249 7 C -0.558 4.558 8 H 0.044 0.956 9 C 0.166 3.834 10 H 0.088 0.912 11 N -0.361 5.361 12 C -0.334 4.334 13 C -0.050 4.050 14 N -0.292 5.292 15 C -0.035 4.035 16 C -0.099 4.099 17 N -0.313 5.313 18 C -0.090 4.090 19 S 0.318 5.682 20 H 0.070 0.930 21 H 0.148 0.852 22 H 0.146 0.854 23 H 0.208 0.792 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.545 -7.154 1.765 16.305 hybrid contribution 0.506 0.041 1.781 1.851 sum 15.051 -7.113 3.546 17.020 Atomic orbital electron populations 1.70119 1.09121 1.28079 1.51869 1.25923 0.95083 1.04020 0.92243 0.86321 0.84668 0.75774 0.77785 1.22469 1.07109 1.24931 1.21001 0.90175 0.92637 1.51983 0.95566 1.17643 0.92732 0.80991 0.92003 0.91204 1.59820 1.14890 1.56440 1.04904 1.25129 1.08082 1.02494 0.97650 1.20497 0.99860 0.82995 1.01636 1.47544 1.53222 1.10672 1.17739 1.23200 0.98034 0.86245 0.95979 1.23262 1.00912 0.97011 0.88759 1.74610 1.24234 1.06170 1.26254 1.26766 0.96591 0.95774 0.89884 1.85289 1.60963 1.01122 1.20870 0.93008 0.85164 0.85394 0.79213 0.87152 0.88073 0.87182 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 15 2 C 0.03 1.46 5.47 84.66 0.46 1.92 15 3 Si 0.93 42.21 26.94 68.60 1.85 44.05 15 4 H -0.30 -13.43 7.11 99.48 0.71 -12.72 15 5 H -0.15 -5.85 5.17 99.48 0.51 -5.34 15 6 H -0.32 -15.46 7.11 99.48 0.71 -14.75 15 7 C -0.52 -27.90 9.29 25.60 0.24 -27.66 15 8 H 0.03 1.62 7.98 -2.91 -0.02 1.59 15 9 C 0.28 11.30 2.61 43.42 0.11 11.42 15 10 H 0.07 2.69 7.55 -2.39 -0.02 2.67 15 11 N -0.83 -29.85 5.82 -174.94 -1.02 -30.86 15 12 C -0.21 -7.61 5.41 25.07 0.14 -7.47 15 13 C 0.08 2.37 11.05 83.08 0.92 3.29 15 14 N -0.58 -17.03 3.45 -517.58 -1.79 -18.82 15 15 C 0.09 1.74 8.08 86.20 0.70 2.44 15 16 C 0.03 0.70 8.02 86.61 0.69 1.39 15 17 N -0.58 -18.91 11.70 -344.58 -4.03 -22.94 15 18 C 0.29 10.01 8.92 179.73 1.60 11.62 15 19 S 0.07 2.74 23.04 -56.49 -1.30 1.44 15 20 H 0.26 15.50 8.31 -92.70 -0.77 14.73 15 21 H 0.33 9.69 9.06 -89.69 -0.81 8.88 15 22 H 0.33 12.28 8.83 -89.69 -0.79 11.49 15 23 H 0.19 4.61 8.06 -2.91 -0.02 4.58 15 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.11 1.91 8.14 -2.38 -0.02 1.89 15 27 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 Total: -1.00 -69.41 245.48 -1.72 -71.13 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.59 Total: 18.16 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.86 Total: -3.06 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -6.54 Total: -131.72 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.85 Total: 44.05 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.30 Total: 1.44 kcal Total: -69.41 -1.72 -71.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.146 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds