Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47418 * 240.00296 * 3 2 1 5 5 H 1.48504 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47400 * 119.99715 * 3 2 1 7 7 C 1.37871 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00553 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99954 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47137 * 300.00409 * 9 7 2 11 11 N 1.46899 * 109.46717 * 59.99753 * 9 7 2 12 12 C 1.50699 * 109.47296 * 180.02562 * 9 7 2 13 13 C 1.31611 * 127.10940 * 115.00316 * 12 9 7 14 14 N 1.38152 * 118.84135 * 180.02562 * 13 12 9 15 15 C 1.48701 * 136.91893 * 180.02562 * 14 13 12 16 16 C 1.53731 * 103.93905 * 179.90072 * 15 14 13 17 17 N 1.46922 * 103.85013 * 0.12881 * 16 15 14 18 18 C 1.30681 * 110.14274 * 359.85011 * 17 16 15 19 19 S 1.77092 * 127.10742 * 295.02463 * 12 9 7 20 20 H 0.97002 * 119.99621 * 359.97438 * 1 2 3 21 21 H 1.00893 * 111.00325 * 296.04346 * 11 9 7 22 22 H 1.00903 * 110.99999 * 60.00806 * 11 9 7 23 23 H 1.08003 * 120.57873 * 359.97438 * 13 12 9 24 24 H 1.09002 * 110.55996 * 298.55638 * 15 14 13 25 25 H 1.09005 * 110.55746 * 61.24786 * 15 14 13 26 26 H 1.09001 * 110.51735 * 118.70396 * 16 15 14 27 27 H 1.09000 * 110.51651 * 241.44317 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4060 -2.5766 -1.1996 12 6 2.2303 -3.6446 -0.0005 13 6 2.4091 -4.5364 0.9507 14 7 3.3617 -5.5207 0.7709 15 6 3.8822 -6.6820 1.5401 16 6 4.9578 -7.2830 0.6209 17 7 4.9395 -6.4093 -0.5601 18 6 4.0437 -5.4696 -0.4108 19 16 3.3787 -4.0685 -1.2803 20 1 -0.4850 0.8401 0.0004 21 1 -0.3013 -1.8572 -1.1907 22 1 0.9637 -2.5251 -2.0390 23 1 1.8220 -4.4989 1.8564 24 1 4.3233 -6.3515 2.4805 25 1 3.0882 -7.4058 1.7245 26 1 5.9342 -7.2523 1.1045 27 1 4.6981 -8.3055 0.3466 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260148892.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = 48.530547 kcal Electronic energy + Delta-G solvation = -13070.995497 eV Core-core repulsion = 10762.221644 eV Total energy + Delta-G solvation = -2308.773853 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57743 -37.55650 -35.65587 -33.24994 -31.24972 -30.14536 -27.82994 -24.83536 -23.75864 -22.82111 -20.55607 -19.01969 -18.24038 -17.22610 -16.92731 -16.20856 -16.08603 -15.11899 -14.90853 -14.67905 -14.17164 -13.81775 -13.51504 -13.25585 -13.05233 -12.79041 -12.76633 -12.05851 -11.97770 -11.55808 -11.06200 -11.04302 -10.66988 -10.07821 -9.22884 -8.22873 -8.00060 -6.35964 -0.02164 0.70742 1.16941 1.33517 1.41976 1.44316 1.51238 1.79630 2.40223 3.08059 3.33271 3.82371 4.03196 4.26286 4.43273 4.52987 4.64201 4.75871 4.82670 4.85098 5.35609 5.48583 5.67060 6.01261 6.06965 6.54926 6.61946 6.89669 7.09423 7.39667 8.82990 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048037 B = 0.007482 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.742343 B = 3741.601767 C = 3834.378378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.561 4.561 8 H 0.050 0.950 9 C 0.295 3.705 10 H 0.038 0.962 11 N -0.841 5.841 12 C -0.160 4.160 13 C 0.062 3.938 14 N -0.581 5.581 15 C 0.087 3.913 16 C 0.034 3.966 17 N -0.579 5.579 18 C 0.293 3.707 19 S 0.084 5.916 20 H 0.269 0.731 21 H 0.351 0.649 22 H 0.316 0.684 23 H 0.181 0.819 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -9.689 3.322 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.183 3.817 10 H 0.056 0.944 11 N -0.370 5.370 12 C -0.282 4.282 13 C -0.065 4.065 14 N -0.291 5.291 15 C -0.035 4.035 16 C -0.098 4.098 17 N -0.315 5.315 18 C -0.090 4.090 19 S 0.327 5.673 20 H 0.078 0.922 21 H 0.166 0.834 22 H 0.126 0.874 23 H 0.198 0.802 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.700 -10.230 1.998 11.880 hybrid contribution -0.108 1.552 1.761 2.350 sum 5.592 -8.678 3.759 10.987 Atomic orbital electron populations 1.69801 1.06712 1.28187 1.50432 1.25616 0.95674 1.01974 0.93904 0.85674 0.78457 0.79215 0.78673 1.19993 1.20709 1.20039 1.22014 0.93549 0.92125 1.52436 0.93210 1.17075 0.87191 0.85894 0.91551 0.94381 1.59431 1.18155 1.55572 1.03826 1.24058 1.04686 1.03090 0.96343 1.20260 0.94510 0.89577 1.02146 1.47421 1.35228 1.28589 1.17862 1.23185 0.98445 0.85777 0.96099 1.23306 0.99135 0.98532 0.88789 1.74693 1.22314 1.08381 1.26076 1.26792 0.93443 0.98923 0.89804 1.85057 1.38837 1.21918 1.21487 0.92156 0.83357 0.87439 0.80233 0.87942 0.87668 0.87587 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.03 11.54 21.45 0.25 -47.79 15 2 C 0.03 1.51 5.38 84.65 0.46 1.96 15 3 Si 0.95 41.55 29.54 68.60 2.03 43.58 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.56 -28.91 8.71 25.60 0.22 -28.69 15 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 9 C 0.30 14.00 3.20 43.42 0.14 14.13 15 10 H 0.04 1.95 8.12 -2.38 -0.02 1.93 15 11 N -0.84 -38.89 9.18 -174.94 -1.61 -40.49 15 12 C -0.16 -6.60 5.42 25.07 0.14 -6.47 15 13 C 0.06 2.19 11.05 83.08 0.92 3.11 15 14 N -0.58 -18.81 3.45 -517.57 -1.79 -20.60 15 15 C 0.09 1.94 8.07 86.20 0.70 2.63 15 16 C 0.03 0.78 8.04 86.55 0.70 1.48 15 17 N -0.58 -19.72 11.71 -343.85 -4.03 -23.75 15 18 C 0.29 10.63 8.92 179.73 1.60 12.23 15 19 S 0.08 3.28 23.05 -56.49 -1.30 1.98 15 20 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 21 H 0.35 17.26 7.08 -89.70 -0.63 16.63 15 22 H 0.32 14.29 8.84 -89.69 -0.79 13.50 15 23 H 0.18 5.53 8.06 -2.91 -0.02 5.50 15 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.11 1.85 8.14 -2.38 -0.02 1.83 15 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -57.81 249.28 -1.80 -59.61 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.22 Total: 27.06 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 4.87 Total: 0.40 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -7.17 Total: -132.62 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.30 Total: 1.98 kcal Total: -57.81 -1.80 -59.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148892.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.138 kcal (2) G-P(sol) polarization free energy of solvation -57.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds