Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00379 * 2 1 4 4 H 1.48499 * 109.47162 * 94.70866 * 3 2 1 5 5 H 1.48501 * 109.47365 * 214.70664 * 3 2 1 6 6 H 1.48497 * 109.47060 * 334.70992 * 3 2 1 7 7 C 1.37877 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00539 * 7.18866 * 7 2 1 9 9 C 1.50709 * 119.99961 * 187.19057 * 7 2 1 10 10 H 1.08999 * 109.46630 * 329.32452 * 9 7 2 11 11 C 1.52995 * 109.46922 * 209.32315 * 9 7 2 12 12 N 1.46499 * 109.47217 * 65.00290 * 11 9 7 13 13 C 1.34780 * 120.00202 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99571 * 359.97438 * 13 12 11 15 15 C 1.50699 * 109.46886 * 89.32691 * 9 7 2 16 16 C 1.33395 * 125.19842 * 235.94755 * 15 9 7 17 17 C 1.38428 * 114.91746 * 179.86012 * 16 15 9 18 18 C 1.33393 * 114.92123 * 0.42950 * 17 16 15 19 19 S 1.75878 * 125.20735 * 56.25265 * 15 9 7 20 20 H 0.97004 * 119.99342 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46804 * 184.99862 * 11 9 7 22 22 H 1.08996 * 109.47705 * 304.99802 * 11 9 7 23 23 H 0.97007 * 119.99772 * 359.97438 * 12 11 9 24 24 H 1.08001 * 119.99863 * 180.02562 * 13 12 11 25 25 H 1.08001 * 122.54399 * 0.02562 * 16 15 9 26 26 H 1.08003 * 122.53654 * 180.20160 * 17 16 15 27 27 H 1.07994 * 125.20090 * 179.74783 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5963 1.9889 1.3953 5 1 3.4936 1.4708 -0.7972 6 1 1.4006 2.6793 -0.5981 7 6 2.0045 -1.1941 -0.0005 8 1 1.4709 -2.1257 -0.1180 9 6 3.5027 -1.1994 0.1628 10 1 3.9177 -0.2855 -0.2622 11 6 4.0904 -2.4118 -0.5620 12 7 3.8581 -2.2795 -2.0024 13 6 4.2927 -3.2367 -2.8459 14 8 4.8765 -4.2074 -2.4123 15 6 3.8479 -1.2740 1.6278 16 6 4.6163 -0.4017 2.2821 17 6 4.7917 -0.6739 3.6280 18 6 4.1730 -1.7720 4.0647 19 16 3.3056 -2.5286 2.7348 20 1 -0.4849 0.8401 -0.0004 21 1 5.1621 -2.4654 -0.3702 22 1 3.6104 -3.3204 -0.1985 23 1 3.3915 -1.5029 -2.3491 24 1 4.1218 -3.1389 -3.9078 25 1 5.0654 0.4535 1.7991 26 1 5.3874 -0.0466 4.2747 27 1 4.2008 -2.1403 5.0795 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260186194.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -12.280122 kcal Electronic energy + Delta-G solvation = -13164.812774 eV Core-core repulsion = 10821.109221 eV Total energy + Delta-G solvation = -2343.703552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.73124 -37.30961 -35.07869 -32.83511 -31.21365 -27.51970 -25.42770 -23.34826 -21.31209 -20.38652 -18.67996 -17.50344 -17.08329 -15.97952 -15.29750 -14.69165 -14.53649 -14.09531 -13.30398 -12.75580 -12.70754 -12.36706 -12.13870 -11.84276 -11.45780 -11.37194 -10.95061 -10.26384 -10.09665 -9.88997 -9.47318 -9.39497 -8.80118 -8.42227 -7.83856 -7.72393 -6.30917 -4.34313 1.77715 2.42700 2.84240 3.14503 3.20695 3.21837 3.25617 3.43346 3.98819 4.21861 5.00060 5.48355 5.59270 5.70490 5.97116 6.08023 6.15749 6.33576 6.37559 6.68804 6.84181 6.98762 7.09930 7.17576 7.44772 8.08386 8.24485 8.71282 8.74377 9.29033 10.80360 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.014199 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.445311 B = 1971.480453 C = 2955.685024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.084 3.916 3 Si 0.866 3.134 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.082 0.918 9 C 0.052 3.948 10 H 0.062 0.938 11 C 0.135 3.865 12 N -0.712 5.712 13 C 0.484 3.516 14 O -0.576 6.576 15 C -0.104 4.104 16 C -0.194 4.194 17 C -0.125 4.125 18 C -0.256 4.256 19 S 0.111 5.889 20 H 0.267 0.733 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.407 0.593 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 0.238 0.830 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.121 4.121 3 Si 0.693 3.307 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.031 3.969 10 H 0.079 0.921 11 C 0.011 3.989 12 N -0.364 5.364 13 C 0.252 3.748 14 O -0.454 6.454 15 C -0.223 4.223 16 C -0.223 4.223 17 C -0.157 4.157 18 C -0.391 4.391 19 S 0.374 5.626 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.243 0.757 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.373 -1.625 1.020 6.655 hybrid contribution 0.843 2.798 0.212 2.930 sum 7.216 1.173 1.232 7.414 Atomic orbital electron populations 1.69902 1.06283 1.27397 1.48139 1.25024 0.94651 0.98894 0.93548 0.86976 0.80134 0.83989 0.79573 1.19361 1.18838 1.21285 1.20845 0.87959 0.95227 1.51263 0.90035 1.18274 0.98160 0.95389 0.85109 0.92067 1.21304 0.98354 0.99273 0.80010 1.46463 1.57338 1.24578 1.08048 1.22477 0.78436 0.82058 0.91866 1.90661 1.42707 1.31700 1.80349 1.25415 0.97660 0.97416 1.01838 1.19983 1.05041 1.02766 0.94461 1.19978 1.02175 0.97912 0.95621 1.25452 1.07812 1.02936 1.02904 1.84175 1.50469 1.28225 0.99701 0.92245 0.93292 0.92081 0.75727 0.86277 0.85689 0.85700 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.82 13.96 55.43 0.77 -24.04 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.87 19.63 27.29 -169.99 -4.64 14.99 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.26 -5.52 6.32 56.52 0.36 -5.16 15 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -12.79 8.20 -34.44 -0.28 -13.07 15 8 H 0.08 2.26 8.06 -52.48 -0.42 1.84 15 9 C 0.05 1.10 1.81 -92.92 -0.17 0.93 15 10 H 0.06 1.29 5.16 -51.93 -0.27 1.03 15 11 C 0.14 2.65 5.02 -4.05 -0.02 2.63 15 12 N -0.71 -12.28 5.35 -64.68 -0.35 -12.62 15 13 C 0.48 7.83 12.64 54.06 0.68 8.51 15 14 O -0.58 -11.90 17.17 5.55 0.10 -11.80 15 15 C -0.10 -2.16 4.96 -36.00 -0.18 -2.34 15 16 C -0.19 -3.74 10.02 -41.20 -0.41 -4.15 15 17 C -0.13 -2.16 10.18 -41.20 -0.42 -2.58 15 18 C -0.26 -4.34 11.23 29.04 0.33 -4.01 15 19 S 0.11 2.15 23.13 -107.50 -2.49 -0.34 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 23 H 0.41 6.52 8.34 -40.82 -0.34 6.18 15 24 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 25 H 0.13 2.26 8.06 -52.49 -0.42 1.83 15 26 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.15 2.10 8.06 -52.49 -0.42 1.68 15 LS Contribution 255.33 15.07 3.85 3.85 Total: -1.00 -30.01 255.33 -6.07 -36.08 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.75 Total: 5.89 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.57 Total: -12.00 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.43 Total: -36.67 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.10 Total: -11.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.64 Total: 14.99 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.49 Total: -0.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.01 -6.07 -36.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186194.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.796 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds