Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86792 * 120.00198 * 2 1 4 4 H 1.48500 * 109.46894 * 269.99782 * 3 2 1 5 5 H 1.48502 * 109.47334 * 29.99960 * 3 2 1 6 6 H 1.48504 * 109.47073 * 149.99833 * 3 2 1 7 7 C 1.40250 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.39912 * 120.00254 * 0.02562 * 7 2 1 10 10 N 1.31865 * 125.55477 * 180.26638 * 9 7 2 11 11 C 1.30462 * 115.68696 * 180.18031 * 10 9 7 12 12 C 1.50695 * 122.10168 * 179.81466 * 11 10 9 13 13 H 1.08995 * 110.36006 * 64.01509 * 12 11 10 14 14 C 1.54951 * 110.30655 * 301.87462 * 12 11 10 15 15 C 1.55312 * 100.94225 * 204.64087 * 14 12 11 16 16 C 1.54380 * 102.25056 * 34.13333 * 15 14 12 17 17 O 1.43245 * 107.59000 * 338.64209 * 16 15 14 18 18 C 1.34857 * 115.79552 * 359.53458 * 11 10 9 19 19 S 1.71045 * 109.23226 * 0.25648 * 18 11 10 20 20 H 0.97000 * 119.99864 * 359.97438 * 1 2 3 21 21 H 1.09000 * 111.12523 * 322.56117 * 14 12 11 22 22 H 1.08998 * 111.12948 * 86.72345 * 14 12 11 23 23 H 1.08999 * 110.84840 * 275.94257 * 15 14 12 24 24 H 1.08999 * 110.84966 * 152.32055 * 15 14 12 25 25 H 1.08996 * 109.83192 * 219.13077 * 16 15 14 26 26 H 1.09002 * 109.83458 * 98.15431 * 16 15 14 27 27 H 1.07991 * 125.38518 * 180.22450 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 2.4885 2.0462 -1.4001 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4400 0.7001 7 6 2.0082 -1.2146 0.0005 8 1 3.0882 -1.2147 0.0001 9 6 1.3086 -2.4263 0.0005 10 7 1.8543 -3.6268 0.0060 11 6 1.0180 -4.6281 0.0012 12 6 1.4844 -6.0610 0.0022 13 1 2.0231 -6.2838 0.9232 14 6 2.3865 -6.3338 -1.2278 15 6 2.2052 -7.8676 -1.3920 16 6 0.7385 -8.0726 -0.9559 17 8 0.3659 -6.9496 -0.1485 18 6 -0.2901 -4.3002 0.0011 19 16 -0.4440 -2.5967 0.0005 20 1 -0.4850 0.8401 0.0004 21 1 2.0251 -5.7992 -2.1063 22 1 3.4256 -6.0815 -1.0166 23 1 2.8847 -8.4110 -0.7354 24 1 2.3463 -8.1659 -2.4308 25 1 0.6503 -8.9908 -0.3753 26 1 0.0955 -8.1259 -1.8344 27 1 -1.1108 -5.0022 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260200824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -31.730611 kcal Electronic energy + Delta-G solvation = -13101.949447 eV Core-core repulsion = 10757.402459 eV Total energy + Delta-G solvation = -2344.546989 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15416 -37.10276 -34.07002 -31.71111 -30.20496 -27.88275 -26.16618 -23.26641 -21.26447 -21.17491 -18.16383 -17.58640 -16.46098 -15.65686 -15.14507 -14.80196 -14.36061 -13.59388 -13.22429 -12.74188 -12.36304 -12.10507 -11.74952 -11.44089 -11.31272 -11.03802 -11.03374 -10.57501 -10.51216 -10.31930 -9.64311 -9.39943 -9.00271 -7.80827 -7.71969 -7.06984 -7.03524 -4.69610 2.57833 2.94804 3.00525 3.06636 3.58839 3.71167 4.09696 4.11586 4.24487 4.88130 5.08095 5.13232 5.31189 5.62916 5.68179 5.88140 5.96018 6.17048 6.21020 6.37858 6.61079 6.85176 6.86131 7.20754 7.57488 7.69717 7.94108 8.35877 8.47041 9.77892 9.86683 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058643 B = 0.007316 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.350281 B = 3826.533506 C = 4204.451887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.055 3.945 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.377 4.377 8 H 0.102 0.898 9 C 0.207 3.793 10 N -0.598 5.598 11 C 0.097 3.903 12 C 0.161 3.839 13 H 0.071 0.929 14 C -0.131 4.131 15 C -0.159 4.159 16 C 0.052 3.948 17 O -0.374 6.374 18 C -0.434 4.434 19 S 0.099 5.901 20 H 0.297 0.703 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -5.169 -1.949 5.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.420 4.420 8 H 0.120 0.880 9 C -0.047 4.047 10 N -0.321 5.321 11 C -0.042 4.042 12 C 0.102 3.898 13 H 0.089 0.911 14 C -0.169 4.169 15 C -0.196 4.196 16 C -0.025 4.025 17 O -0.293 6.293 18 C -0.578 4.578 19 S 0.357 5.643 20 H 0.110 0.890 21 H 0.095 0.905 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.300 -4.359 -1.846 4.909 hybrid contribution 0.634 -0.419 -0.114 0.769 sum 1.934 -4.778 -1.960 5.515 Atomic orbital electron populations 1.68835 1.07702 1.30740 1.33691 1.26167 0.95090 1.02569 0.92860 0.85728 0.80003 0.78283 0.79543 1.18997 1.19785 1.18102 1.18946 0.95649 0.87354 1.40061 0.88015 1.23878 0.91254 0.93875 0.95661 1.67080 1.34837 0.97005 1.33202 1.19344 0.89488 0.93322 1.02024 1.21010 0.85053 0.86681 0.97102 0.91143 1.23099 1.01104 0.93740 0.99001 1.23160 0.96883 0.97568 1.02034 1.23036 0.94992 0.89775 0.94692 1.88414 1.36178 1.33640 1.71082 1.25783 0.99934 1.03369 1.28686 1.84186 1.11721 0.95066 1.73299 0.88991 0.90542 0.89779 0.90877 0.90508 0.92054 0.91918 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.05 10.67 55.56 0.59 -18.46 15 2 C 0.06 1.32 5.50 -17.28 -0.10 1.22 15 3 Si 0.94 17.60 29.56 -169.99 -5.03 12.58 15 4 H -0.27 -4.88 7.11 56.52 0.40 -4.47 15 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.77 7.11 56.52 0.40 -4.36 15 7 C -0.38 -9.90 9.45 -38.20 -0.36 -10.26 15 8 H 0.10 2.56 7.85 -52.49 -0.41 2.15 15 9 C 0.21 5.78 7.14 -16.91 -0.12 5.65 15 10 N -0.60 -16.41 10.60 -9.33 -0.10 -16.51 15 11 C 0.10 2.50 6.00 -84.38 -0.51 1.99 15 12 C 0.16 3.40 3.98 -26.86 -0.11 3.29 15 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 14 C -0.13 -2.32 6.50 -24.48 -0.16 -2.48 15 15 C -0.16 -2.15 7.02 -24.78 -0.17 -2.33 15 16 C 0.05 0.78 7.79 37.88 0.30 1.08 15 17 O -0.37 -7.55 9.97 -35.23 -0.35 -7.90 15 18 C -0.43 -11.32 10.32 29.53 0.30 -11.02 15 19 S 0.10 2.62 20.18 -107.50 -2.17 0.45 15 20 H 0.30 6.47 8.29 -40.82 -0.34 6.13 15 21 H 0.08 1.47 8.05 -51.93 -0.42 1.05 15 22 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 27 H 0.13 3.37 7.56 -52.49 -0.40 2.98 15 LS Contribution 246.62 15.07 3.72 3.72 Total: -1.00 -29.14 246.62 -7.16 -36.30 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.90 Total: 2.68 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.92 Total: -12.86 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.49 Total: -34.96 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.35 Total: -7.90 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.17 Total: 0.45 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.14 -7.16 -36.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260200824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.567 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds