Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47143 * 240.00364 * 3 2 1 5 5 H 1.48500 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46615 * 120.00525 * 3 2 1 7 7 C 1.40247 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.39911 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.31870 * 125.55538 * 0.02905 * 9 7 2 11 11 C 1.30455 * 115.69064 * 179.69383 * 10 9 7 12 12 C 1.34861 * 115.79110 * 0.52469 * 11 10 9 13 13 C 1.50698 * 125.37963 * 179.77308 * 12 11 10 14 14 H 1.09004 * 109.99130 * 25.79976 * 13 12 11 15 15 C 1.54106 * 109.87792 * 264.71796 * 13 12 11 16 16 C 1.54807 * 104.18688 * 238.54516 * 15 13 12 17 17 C 1.54994 * 102.09494 * 339.12124 * 16 15 13 18 18 O 1.43739 * 109.88141 * 146.88620 * 13 12 11 19 19 S 1.71032 * 109.23677 * 359.50759 * 12 11 10 20 20 H 0.96995 * 119.99740 * 359.97438 * 1 2 3 21 21 H 1.07993 * 122.10266 * 180.31499 * 11 10 9 22 22 H 1.08997 * 110.48714 * 357.22178 * 15 13 12 23 23 H 1.09000 * 110.48945 * 119.87049 * 15 13 12 24 24 H 1.09005 * 110.90346 * 97.31858 * 16 15 13 25 25 H 1.09000 * 110.90998 * 220.91594 * 16 15 13 26 26 H 1.08998 * 110.61564 * 278.52047 * 17 16 15 27 27 H 1.08997 * 110.62119 * 155.52521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2760 2.7464 0.0006 6 1 3.0949 1.6962 1.2125 7 6 2.0082 -1.2146 -0.0005 8 1 3.0882 -1.2147 -0.0010 9 6 1.3086 -2.4262 -0.0005 10 7 -0.0039 -2.5539 -0.0006 11 6 -0.4530 -3.7787 -0.0069 12 6 0.4850 -4.7476 -0.0013 13 6 0.2092 -6.2291 -0.0019 14 1 -0.7634 -6.4269 -0.4527 15 6 0.2368 -6.7678 1.4417 16 6 1.3399 -7.8536 1.4205 17 6 1.4316 -8.1940 -0.0888 18 8 1.2366 -6.9174 -0.7345 19 16 2.0372 -4.0293 -0.0010 20 1 -0.4849 0.8400 0.0004 21 1 -1.5094 -4.0026 -0.0126 22 1 0.4972 -5.9730 2.1406 23 1 -0.7259 -7.2070 1.7035 24 1 2.2856 -7.4545 1.7874 25 1 1.0375 -8.7268 1.9986 26 1 0.6444 -8.8922 -0.3733 27 1 2.4131 -8.6011 -0.3316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234011.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -20.492162 kcal Electronic energy + Delta-G solvation = -13055.866091 eV Core-core repulsion = 10711.806438 eV Total energy + Delta-G solvation = -2344.059653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90282 -37.28222 -33.77664 -31.67179 -30.49983 -28.23364 -25.42635 -22.76099 -21.80908 -20.79960 -19.32389 -16.85472 -16.42547 -15.72720 -15.21219 -14.81436 -14.24671 -13.34715 -13.22750 -12.69160 -12.60601 -12.28827 -11.49634 -11.37836 -11.24786 -11.03326 -10.91726 -10.65971 -10.51855 -10.19756 -9.66933 -9.49560 -9.23682 -7.63079 -7.59553 -7.40364 -6.71428 -4.61817 2.49630 2.97841 3.00017 3.06334 3.34282 3.76491 3.85048 4.30231 4.56095 5.00398 5.16776 5.27512 5.30006 5.57455 5.66754 5.96317 6.00791 6.12062 6.25116 6.28884 6.42540 6.68146 6.85033 7.20651 7.40729 7.63145 7.96851 8.23760 8.57014 9.92756 10.07634 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.068162 B = 0.007031 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.685631 B = 3981.573625 C = 4170.581526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.383 4.383 8 H 0.094 0.906 9 C 0.224 3.776 10 N -0.537 5.537 11 C 0.108 3.892 12 C -0.399 4.399 13 C 0.187 3.813 14 H 0.059 0.941 15 C -0.146 4.146 16 C -0.153 4.153 17 C 0.044 3.956 18 O -0.368 6.368 19 S -0.057 6.057 20 H 0.283 0.717 21 H 0.128 0.872 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -6.932 2.111 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.161 4.161 3 Si 0.744 3.256 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.426 4.426 8 H 0.112 0.888 9 C -0.027 4.027 10 N -0.256 5.256 11 C -0.054 4.054 12 C -0.524 4.524 13 C 0.128 3.872 14 H 0.077 0.923 15 C -0.184 4.184 16 C -0.191 4.191 17 C -0.033 4.033 18 O -0.287 6.287 19 S 0.199 5.801 20 H 0.094 0.906 21 H 0.145 0.855 22 H 0.098 0.902 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.998 -6.683 1.926 7.236 hybrid contribution -0.839 0.256 0.185 0.896 sum 1.159 -6.428 2.111 6.864 Atomic orbital electron populations 1.69998 1.07502 1.29153 1.25922 1.26126 0.95078 1.01171 0.93713 0.86140 0.79942 0.79186 0.80285 1.18490 1.19876 1.18519 1.19020 0.94711 0.88169 1.40693 0.88790 1.24191 0.90095 0.93316 0.95086 1.67740 1.09848 1.18452 1.29546 1.21404 0.98571 0.87976 0.97407 1.23586 0.96497 0.96838 1.35447 1.20379 0.89752 0.87735 0.89368 0.92279 1.23068 0.98203 0.98337 0.98810 1.23100 1.00126 0.98717 0.97172 1.23443 1.00814 0.87501 0.91545 1.88995 1.58387 1.28320 1.53015 1.83040 1.11528 1.05637 1.79853 0.90614 0.85452 0.90164 0.91636 0.90734 0.91074 0.92964 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.37 11.87 55.56 0.66 -17.71 15 2 C 0.07 1.71 5.50 -17.28 -0.10 1.61 15 3 Si 0.92 17.71 29.56 -169.99 -5.03 12.68 15 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.38 -10.03 9.40 -38.20 -0.36 -10.39 15 8 H 0.09 2.26 7.85 -52.48 -0.41 1.85 15 9 C 0.22 6.18 7.07 -16.91 -0.12 6.06 15 10 N -0.54 -15.22 8.76 -13.16 -0.12 -15.33 15 11 C 0.11 2.75 11.15 -19.33 -0.22 2.53 15 12 C -0.40 -9.55 5.21 -35.51 -0.18 -9.74 15 13 C 0.19 3.72 3.87 -27.31 -0.11 3.62 15 14 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 15 C -0.15 -2.42 6.63 -25.20 -0.17 -2.59 15 16 C -0.15 -2.17 7.15 -24.73 -0.18 -2.35 15 17 C 0.04 0.65 7.72 38.21 0.29 0.95 15 18 O -0.37 -7.39 10.86 -35.23 -0.38 -7.78 15 19 S -0.06 -1.43 22.79 -107.50 -2.45 -3.87 15 20 H 0.28 6.59 8.29 -40.82 -0.34 6.25 15 21 H 0.13 2.90 8.06 -52.49 -0.42 2.47 15 22 H 0.08 1.48 7.69 -51.93 -0.40 1.08 15 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -29.86 249.61 -7.59 -37.45 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -2.90 Total: 1.10 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.13 Total: -10.29 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.54 Total: -33.05 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.38 Total: -7.78 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.45 Total: -3.87 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.86 -7.59 -37.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234011.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.953 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds