Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47143 * 240.00364 * 3 2 1 5 5 H 1.48500 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46615 * 120.00525 * 3 2 1 7 7 C 1.40247 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.39911 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.31870 * 125.55538 * 0.02905 * 9 7 2 11 11 C 1.30455 * 115.69064 * 179.69383 * 10 9 7 12 12 C 1.34861 * 115.79110 * 0.52469 * 11 10 9 13 13 C 1.50698 * 125.37963 * 179.77308 * 12 11 10 14 14 H 1.09004 * 109.99130 * 25.79976 * 13 12 11 15 15 C 1.54106 * 109.87792 * 264.71796 * 13 12 11 16 16 C 1.54807 * 104.18688 * 238.54516 * 15 13 12 17 17 C 1.54994 * 102.09494 * 339.12124 * 16 15 13 18 18 O 1.43739 * 109.88141 * 146.88620 * 13 12 11 19 19 S 1.71032 * 109.23677 * 359.50759 * 12 11 10 20 20 H 0.96995 * 119.99740 * 359.97438 * 1 2 3 21 21 H 1.07993 * 122.10266 * 180.31499 * 11 10 9 22 22 H 1.08997 * 110.48714 * 357.22178 * 15 13 12 23 23 H 1.09000 * 110.48945 * 119.87049 * 15 13 12 24 24 H 1.09005 * 110.90346 * 97.31858 * 16 15 13 25 25 H 1.09000 * 110.90998 * 220.91594 * 16 15 13 26 26 H 1.08998 * 110.61564 * 278.52047 * 17 16 15 27 27 H 1.08997 * 110.62119 * 155.52521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2760 2.7464 0.0006 6 1 3.0949 1.6962 1.2125 7 6 2.0082 -1.2146 -0.0005 8 1 3.0882 -1.2147 -0.0010 9 6 1.3086 -2.4262 -0.0005 10 7 -0.0039 -2.5539 -0.0006 11 6 -0.4530 -3.7787 -0.0069 12 6 0.4850 -4.7476 -0.0013 13 6 0.2092 -6.2291 -0.0019 14 1 -0.7634 -6.4269 -0.4527 15 6 0.2368 -6.7678 1.4417 16 6 1.3399 -7.8536 1.4205 17 6 1.4316 -8.1940 -0.0888 18 8 1.2366 -6.9174 -0.7345 19 16 2.0372 -4.0293 -0.0010 20 1 -0.4849 0.8400 0.0004 21 1 -1.5094 -4.0026 -0.0126 22 1 0.4972 -5.9730 2.1406 23 1 -0.7259 -7.2070 1.7035 24 1 2.2856 -7.4545 1.7874 25 1 1.0375 -8.7268 1.9986 26 1 0.6444 -8.8922 -0.3733 27 1 2.4131 -8.6011 -0.3316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234011.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -39.899491 kcal Electronic energy + Delta-G solvation = -13056.707656 eV Core-core repulsion = 10711.806438 eV Total energy + Delta-G solvation = -2344.901218 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35587 -39.18775 -35.65785 -33.06197 -32.12766 -30.02002 -27.11436 -24.63094 -23.18641 -22.26375 -21.19407 -18.59821 -18.29403 -17.12345 -16.80414 -16.46931 -15.77187 -14.98436 -14.59486 -14.49864 -14.42776 -13.93882 -13.09881 -12.93880 -12.73465 -12.59250 -12.31533 -12.15088 -11.99565 -11.62726 -11.52729 -11.24673 -10.69744 -9.62339 -9.55923 -9.39370 -8.57643 -6.59673 0.59057 1.31058 1.45030 1.54157 1.59246 1.82554 2.19946 2.49405 3.12197 3.31423 3.75640 3.94133 4.03653 4.29296 4.34567 4.43626 4.76679 4.82318 4.84494 4.93404 4.98949 5.11860 5.28023 5.32057 5.63130 6.02665 6.10762 6.31325 6.60710 7.97625 8.24614 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.068162 B = 0.007031 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.685631 B = 3981.573625 C = 4170.581526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.025 3.975 3 Si 1.006 2.994 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.106 0.894 9 C 0.188 3.812 10 N -0.573 5.573 11 C 0.078 3.922 12 C -0.388 4.388 13 C 0.181 3.819 14 H 0.071 0.929 15 C -0.141 4.141 16 C -0.145 4.145 17 C 0.038 3.962 18 O -0.401 6.401 19 S -0.056 6.056 20 H 0.292 0.708 21 H 0.146 0.854 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -7.669 2.490 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.201 4.201 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.453 4.453 8 H 0.124 0.876 9 C -0.062 4.062 10 N -0.293 5.293 11 C -0.081 4.081 12 C -0.512 4.512 13 C 0.121 3.879 14 H 0.088 0.912 15 C -0.179 4.179 16 C -0.183 4.183 17 C -0.038 4.038 18 O -0.321 6.321 19 S 0.200 5.800 20 H 0.103 0.897 21 H 0.163 0.837 22 H 0.074 0.926 23 H 0.113 0.887 24 H 0.082 0.918 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.520 -7.469 2.309 8.214 hybrid contribution -1.019 0.342 0.057 1.076 sum 1.502 -7.127 2.365 7.658 Atomic orbital electron populations 1.70082 1.09492 1.30844 1.26475 1.27235 0.95857 1.04745 0.92270 0.84908 0.78437 0.73637 0.80677 1.17685 1.18804 1.17540 1.19529 0.95565 0.88871 1.41309 0.87592 1.24654 0.90522 0.94766 0.96277 1.67697 1.10581 1.20054 1.30985 1.21717 0.99834 0.87785 0.98790 1.24163 0.95388 0.99125 1.32530 1.20541 0.90247 0.85364 0.91750 0.91159 1.22990 1.00775 0.98451 0.95731 1.23094 0.98722 0.99115 0.97329 1.23770 1.02761 0.85805 0.91484 1.88940 1.58376 1.30742 1.54056 1.82875 1.12394 1.04881 1.79830 0.89739 0.83672 0.92641 0.88703 0.91827 0.87283 0.90401 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.71 11.87 21.88 0.26 -39.45 15 2 C 0.03 1.25 5.50 85.35 0.47 1.72 15 3 Si 1.01 35.82 29.56 68.60 2.03 37.85 15 4 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 5 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 6 H -0.25 -8.53 7.11 99.48 0.71 -7.82 15 7 C -0.41 -21.87 9.40 23.16 0.22 -21.65 15 8 H 0.11 5.15 7.85 -2.91 -0.02 5.13 15 9 C 0.19 10.72 7.07 85.09 0.60 11.32 15 10 N -0.57 -33.51 8.76 -195.56 -1.71 -35.22 15 11 C 0.08 4.06 11.15 84.12 0.94 5.00 15 12 C -0.39 -18.69 5.21 24.91 0.13 -18.56 15 13 C 0.18 6.97 3.87 30.22 0.12 7.09 15 14 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 15 C -0.14 -4.39 6.63 31.59 0.21 -4.19 15 16 C -0.15 -3.65 7.15 31.89 0.23 -3.42 15 17 C 0.04 1.00 7.72 72.66 0.56 1.56 15 18 O -0.40 -15.52 10.86 -148.98 -1.62 -17.14 15 19 S -0.06 -2.86 22.79 -56.49 -1.29 -4.15 15 20 H 0.29 13.77 8.29 -92.71 -0.77 13.00 15 21 H 0.15 6.73 8.06 -2.91 -0.02 6.70 15 22 H 0.05 2.00 7.69 -2.39 -0.02 1.98 15 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 Total: -1.00 -66.16 249.61 2.31 -63.85 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.17 Total: 15.39 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.47 Total: -21.14 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.45 Total: -74.67 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.62 Total: -17.14 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.29 Total: -4.15 kcal Total: -66.16 2.31 -63.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234011.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.950 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds