Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86803 * 120.00228 * 2 1 4 4 H 1.48501 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47198 * 299.99725 * 3 2 1 6 6 H 1.48504 * 109.47261 * 59.99902 * 3 2 1 7 7 C 1.40340 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.39801 * 120.00203 * 0.02562 * 7 2 1 10 10 N 1.32810 * 125.79774 * 179.97438 * 9 7 2 11 11 C 1.33065 * 108.64417 * 179.76423 * 10 9 7 12 12 C 1.50705 * 126.00846 * 180.30532 * 11 10 9 13 13 H 1.09004 * 110.35987 * 64.28322 * 12 11 10 14 14 C 1.54277 * 110.39837 * 301.83742 * 12 11 10 15 15 C 1.53859 * 108.92443 * 213.25133 * 14 12 11 16 16 C 1.55138 * 106.89901 * 47.26125 * 15 14 12 17 17 S 1.83096 * 110.40275 * 186.61059 * 12 11 10 18 18 C 1.35931 * 107.98427 * 0.44028 * 11 10 9 19 19 O 1.34596 * 107.35600 * 359.56576 * 18 11 10 20 20 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.61379 * 333.17345 * 14 12 11 22 22 H 1.09001 * 109.60715 * 93.33663 * 14 12 11 23 23 H 1.08995 * 109.98001 * 287.89727 * 15 14 12 24 24 H 1.09002 * 110.00717 * 166.63494 * 15 14 12 25 25 H 1.09003 * 110.85853 * 199.70823 * 16 15 14 26 26 H 1.09002 * 111.03552 * 76.13358 * 16 15 14 27 27 H 1.08002 * 126.32545 * 179.83533 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3088 -2.4261 0.0005 10 7 1.8533 -3.6375 0.0005 11 6 0.8777 -4.5424 0.0057 12 6 1.0571 -6.0387 0.0141 13 1 1.5427 -6.3573 0.9365 14 6 1.8784 -6.4886 -1.2120 15 6 1.3845 -7.8745 -1.6621 16 6 -0.1648 -7.8078 -1.7092 17 16 -0.5595 -6.8765 -0.1786 18 6 -0.3092 -3.8799 -0.0009 19 8 -0.0337 -2.5624 -0.0004 20 1 -0.4850 0.8401 -0.0004 21 1 1.7472 -5.7724 -2.0231 22 1 2.9336 -6.5454 -0.9446 23 1 1.7029 -8.6335 -0.9476 24 1 1.7774 -8.1071 -2.6519 25 1 -0.5975 -8.8077 -1.6775 26 1 -0.5064 -7.2667 -2.5917 27 1 -1.2920 -4.3279 -0.0015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322495.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -4.405396 kcal Electronic energy + Delta-G solvation = -13105.864508 eV Core-core repulsion = 10762.502430 eV Total energy + Delta-G solvation = -2343.362079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97315 -36.01740 -33.72799 -32.82740 -30.25497 -28.08233 -25.77685 -24.14956 -20.95300 -20.68905 -19.44237 -17.59468 -15.97537 -15.60559 -15.27946 -14.56292 -14.52394 -13.88644 -13.55091 -13.18059 -12.59010 -12.14993 -11.86814 -11.37975 -11.35719 -11.24713 -11.05810 -10.74294 -10.52552 -10.35616 -9.63293 -9.61040 -9.22753 -8.56393 -7.41386 -7.37354 -6.90176 -4.66412 2.07757 2.67210 2.87106 3.03116 3.10375 3.35234 3.84644 4.08219 4.77833 4.82457 4.98474 5.14670 5.26947 5.39433 5.42245 5.62608 5.76036 5.90223 5.97616 6.17439 6.44241 6.78107 6.88086 7.03522 7.68225 7.91426 8.19386 8.53667 8.69068 9.83936 10.12439 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.066148 B = 0.006665 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.188829 B = 4199.879496 C = 4457.137499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.930 3.070 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.432 4.432 8 H 0.109 0.891 9 C 0.347 3.653 10 N -0.608 5.608 11 C 0.005 3.995 12 C 0.062 3.938 13 H 0.100 0.900 14 C -0.115 4.115 15 C -0.127 4.127 16 C -0.075 4.075 17 S -0.289 6.289 18 C -0.185 4.185 19 O -0.185 6.185 20 H 0.285 0.715 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -8.574 -2.858 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.152 4.152 3 Si 0.754 3.246 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.127 0.873 9 C 0.161 3.839 10 N -0.343 5.343 11 C -0.120 4.120 12 C -0.067 4.067 13 H 0.118 0.882 14 C -0.154 4.154 15 C -0.166 4.166 16 C -0.224 4.224 17 S -0.062 6.062 18 C -0.260 4.260 19 O -0.076 6.076 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.089 -8.516 -2.199 8.795 hybrid contribution 0.403 0.756 -0.649 1.074 sum 0.492 -7.760 -2.848 8.281 Atomic orbital electron populations 1.69721 1.07606 1.29854 1.33239 1.26105 0.95029 1.01942 0.92126 0.85890 0.80602 0.79486 0.78650 1.18031 1.19612 1.19604 1.18400 0.94758 0.85779 1.47838 0.87278 1.22087 0.76836 0.93243 0.91719 1.70733 1.31115 0.97853 1.34557 1.20711 0.90958 0.93267 1.07107 1.21642 0.91789 0.92147 1.01161 0.88167 1.22294 1.00510 0.95533 0.97100 1.22589 0.93269 0.98219 1.02474 1.24220 0.98439 1.01942 0.97771 1.87370 1.25816 1.57819 1.35211 1.24329 0.99278 0.82065 1.20294 1.84869 1.26578 1.23720 1.72432 0.90387 0.90464 0.89776 0.90571 0.90162 0.88395 0.89390 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.78 11.98 55.57 0.67 -20.12 15 2 C 0.07 1.79 5.50 -17.28 -0.10 1.70 15 3 Si 0.93 18.58 29.56 -169.99 -5.03 13.55 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 7 C -0.43 -11.95 9.45 -38.21 -0.36 -12.32 15 8 H 0.11 2.87 7.85 -52.49 -0.41 2.46 15 9 C 0.35 10.11 7.66 -16.54 -0.13 9.99 15 10 N -0.61 -16.80 11.35 -9.64 -0.11 -16.90 15 11 C 0.00 0.11 6.19 -82.88 -0.51 -0.40 15 12 C 0.06 1.18 3.80 -27.21 -0.10 1.08 15 13 H 0.10 1.87 8.14 -51.93 -0.42 1.45 15 14 C -0.12 -1.86 5.93 -25.62 -0.15 -2.01 15 15 C -0.13 -1.54 6.46 -25.15 -0.16 -1.70 15 16 C -0.08 -0.96 7.38 38.29 0.28 -0.68 15 17 S -0.29 -4.92 21.21 -107.50 -2.28 -7.20 15 18 C -0.18 -4.73 11.27 29.90 0.34 -4.40 15 19 O -0.18 -5.40 9.06 3.11 0.03 -5.37 15 20 H 0.29 6.79 8.29 -40.82 -0.34 6.46 15 21 H 0.08 1.41 7.85 -51.93 -0.41 1.00 15 22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.18 4.17 7.22 -52.49 -0.38 3.79 15 LS Contribution 248.17 15.07 3.74 3.74 Total: -1.00 -30.53 248.17 -6.74 -37.27 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.87 Total: 3.76 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.89 Total: -8.74 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.56 Total: -37.02 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: 0.03 Total: -5.37 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.28 Total: -7.20 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.53 -6.74 -37.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322495.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.868 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds