Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86803 * 120.00228 * 2 1 4 4 H 1.48501 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47198 * 299.99725 * 3 2 1 6 6 H 1.48504 * 109.47261 * 59.99902 * 3 2 1 7 7 C 1.40340 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.39801 * 120.00203 * 0.02562 * 7 2 1 10 10 N 1.32810 * 125.79774 * 179.97438 * 9 7 2 11 11 C 1.33065 * 108.64417 * 179.76423 * 10 9 7 12 12 C 1.50705 * 126.00846 * 180.30532 * 11 10 9 13 13 H 1.09004 * 110.35987 * 64.28322 * 12 11 10 14 14 C 1.54277 * 110.39837 * 301.83742 * 12 11 10 15 15 C 1.53859 * 108.92443 * 213.25133 * 14 12 11 16 16 C 1.55138 * 106.89901 * 47.26125 * 15 14 12 17 17 S 1.83096 * 110.40275 * 186.61059 * 12 11 10 18 18 C 1.35931 * 107.98427 * 0.44028 * 11 10 9 19 19 O 1.34596 * 107.35600 * 359.56576 * 18 11 10 20 20 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.61379 * 333.17345 * 14 12 11 22 22 H 1.09001 * 109.60715 * 93.33663 * 14 12 11 23 23 H 1.08995 * 109.98001 * 287.89727 * 15 14 12 24 24 H 1.09002 * 110.00717 * 166.63494 * 15 14 12 25 25 H 1.09003 * 110.85853 * 199.70823 * 16 15 14 26 26 H 1.09002 * 111.03552 * 76.13358 * 16 15 14 27 27 H 1.08002 * 126.32545 * 179.83533 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3088 -2.4261 0.0005 10 7 1.8533 -3.6375 0.0005 11 6 0.8777 -4.5424 0.0057 12 6 1.0571 -6.0387 0.0141 13 1 1.5427 -6.3573 0.9365 14 6 1.8784 -6.4886 -1.2120 15 6 1.3845 -7.8745 -1.6621 16 6 -0.1648 -7.8078 -1.7092 17 16 -0.5595 -6.8765 -0.1786 18 6 -0.3092 -3.8799 -0.0009 19 8 -0.0337 -2.5624 -0.0004 20 1 -0.4850 0.8401 -0.0004 21 1 1.7472 -5.7724 -2.0231 22 1 2.9336 -6.5454 -0.9446 23 1 1.7029 -8.6335 -0.9476 24 1 1.7774 -8.1071 -2.6519 25 1 -0.5975 -8.8077 -1.6775 26 1 -0.5064 -7.2667 -2.5917 27 1 -1.2920 -4.3279 -0.0015 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322495.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -25.717309 kcal Electronic energy + Delta-G solvation = -13106.788662 eV Core-core repulsion = 10762.502430 eV Total energy + Delta-G solvation = -2344.286232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.04080 -37.34447 -35.71006 -34.72531 -32.02686 -29.77364 -27.58186 -25.60827 -22.82946 -22.21461 -21.24167 -19.53226 -17.52122 -17.32233 -16.91241 -16.53368 -16.13542 -15.27460 -15.18160 -14.79080 -14.05568 -13.64867 -13.44250 -13.02367 -12.95093 -12.90252 -12.40996 -12.29009 -11.95229 -11.80706 -11.54719 -11.20001 -10.95811 -10.63657 -9.45549 -8.85839 -8.71520 -6.76580 0.76690 1.08754 1.38943 1.42490 1.53949 1.59301 2.15863 2.16782 2.93617 3.17270 3.59294 3.65673 3.91338 4.04876 4.20987 4.39965 4.68975 4.71618 4.80061 4.87654 4.94735 5.00145 5.04472 5.20997 5.72996 5.86631 6.10559 6.51061 6.59072 7.75483 8.20196 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.066148 B = 0.006665 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.188829 B = 4199.879496 C = 4457.137499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.027 3.973 3 Si 1.017 2.983 4 H -0.250 1.250 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.113 0.887 9 C 0.312 3.688 10 N -0.629 5.629 11 C 0.011 3.989 12 C 0.055 3.945 13 H 0.102 0.898 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.063 4.063 17 S -0.320 6.320 18 C -0.212 4.212 19 O -0.212 6.212 20 H 0.298 0.702 21 H 0.050 0.950 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -9.165 -3.605 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.192 4.192 3 Si 0.834 3.166 4 H -0.173 1.173 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.496 4.496 8 H 0.131 0.869 9 C 0.128 3.872 10 N -0.365 5.365 11 C -0.114 4.114 12 C -0.074 4.074 13 H 0.120 0.880 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.210 4.210 17 S -0.093 6.093 18 C -0.285 4.285 19 O -0.105 6.105 20 H 0.109 0.891 21 H 0.069 0.931 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.150 0.850 26 H 0.108 0.892 27 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.725 -9.143 -2.948 9.634 hybrid contribution 0.143 0.876 -0.439 0.990 sum 0.868 -8.267 -3.387 8.976 Atomic orbital electron populations 1.69783 1.09554 1.31878 1.32756 1.27264 0.95875 1.05606 0.90486 0.84650 0.79036 0.73516 0.79392 1.17271 1.18238 1.18339 1.18860 0.95261 0.86682 1.48837 0.86882 1.22703 0.77224 0.94475 0.92835 1.70731 1.32130 0.98163 1.35453 1.21445 0.89830 0.95660 1.04508 1.21743 0.94012 0.88776 1.02837 0.87962 1.22284 1.00564 0.97485 0.94773 1.22556 0.92465 0.95645 1.04525 1.24438 0.99082 1.02663 0.94827 1.87438 1.25008 1.58382 1.38481 1.24793 1.00661 0.81269 1.21783 1.84812 1.26811 1.25555 1.73310 0.89121 0.93109 0.89227 0.88613 0.87147 0.85024 0.89183 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.12 11.98 21.89 0.26 -43.86 15 2 C 0.03 1.37 5.50 85.38 0.47 1.83 15 3 Si 1.02 37.47 29.56 68.60 2.03 39.49 15 4 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 5 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 7 C -0.46 -26.22 9.45 23.16 0.22 -26.00 15 8 H 0.11 6.10 7.85 -2.91 -0.02 6.07 15 9 C 0.31 18.95 7.66 84.92 0.65 19.60 15 10 N -0.63 -35.99 11.35 -297.41 -3.37 -39.36 15 11 C 0.01 0.54 6.19 41.84 0.26 0.80 15 12 C 0.06 2.12 3.80 30.28 0.11 2.24 15 13 H 0.10 3.83 8.14 -2.39 -0.02 3.81 15 14 C -0.11 -3.49 5.93 31.32 0.19 -3.30 15 15 C -0.11 -2.35 6.46 31.62 0.20 -2.14 15 16 C -0.06 -1.39 7.38 72.71 0.54 -0.86 15 17 S -0.32 -10.53 21.21 -56.49 -1.20 -11.73 15 18 C -0.21 -11.27 11.27 67.28 0.76 -10.51 15 19 O -0.21 -12.96 9.06 -11.79 -0.11 -13.07 15 20 H 0.30 14.22 8.29 -92.71 -0.77 13.45 15 21 H 0.05 1.84 7.85 -2.39 -0.02 1.82 15 22 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.13 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.20 9.46 7.22 -2.91 -0.02 9.44 15 Total: -1.00 -69.02 248.17 2.18 -66.83 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.17 Total: 20.04 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.40 Total: -18.34 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.11 Total: -83.22 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.11 Total: -13.07 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: -10.53 SS G_CDS: -1.20 Total: -11.73 kcal Total: -69.02 2.18 -66.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322495.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal (2) G-P(sol) polarization free energy of solvation -69.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds