Wall clock time and date at job start Mon Mar 30 2020 02:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30996 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48501 * 109.46892 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47236 * 29.99722 * 3 2 1 6 6 H 1.48504 * 109.47035 * 149.99619 * 3 2 1 7 7 C 1.39725 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.41254 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.38794 * 126.67558 * 0.02562 * 9 7 2 11 11 O 1.34422 * 106.50862 * 179.97438 * 10 9 7 12 12 C 1.34059 * 108.38603 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.07995 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.60625 * 179.68828 * 13 12 11 15 15 C 1.53859 * 109.60952 * 300.02195 * 13 12 11 16 16 C 1.55133 * 106.93248 * 166.98076 * 15 13 12 17 17 S 1.83495 * 102.19055 * 317.92735 * 16 15 13 18 18 C 1.54272 * 109.46936 * 59.43716 * 13 12 11 19 19 N 1.29915 * 109.84257 * 0.26591 * 12 11 10 20 20 H 0.96997 * 120.00226 * 0.02562 * 1 2 3 21 21 H 1.07997 * 126.74964 * 359.97438 * 10 9 7 22 22 H 1.09002 * 109.97645 * 286.36270 * 15 13 12 23 23 H 1.08997 * 109.97663 * 47.60174 * 15 13 12 24 24 H 1.08997 * 110.86096 * 76.08264 * 16 15 13 25 25 H 1.09003 * 110.86007 * 199.72673 * 16 15 13 26 26 H 1.09002 * 110.39656 * 331.00776 * 18 13 12 27 27 H 1.08997 * 110.40180 * 93.41805 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4413 2.6527 0.7000 6 1 3.5414 1.4403 0.7001 7 6 2.0086 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0010 9 6 1.3024 -2.4334 0.0005 10 6 -0.0761 -2.5948 -0.0005 11 8 -0.3056 -3.9193 -0.0006 12 6 0.8757 -4.5531 -0.0003 13 6 1.0558 -6.0493 -0.0009 14 1 2.1189 -6.2897 -0.0061 15 6 0.3969 -6.6492 1.2534 16 6 0.3202 -8.1830 1.0337 17 16 -0.2050 -8.2974 -0.7208 18 6 0.3836 -6.6476 -1.2540 19 7 1.8420 -3.6848 0.0057 20 1 -0.4850 0.8400 -0.0004 21 1 -0.8186 -1.8105 -0.0010 22 1 1.0015 -6.4289 2.1331 23 1 -0.6056 -6.2405 1.3790 24 1 1.2970 -8.6450 1.1770 25 1 -0.4233 -8.6327 1.6919 26 1 -0.4564 -6.0275 -1.5672 27 1 1.1072 -6.7456 -2.0632 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260333143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:41 Heat of formation + Delta-G solvation = -2.007870 kcal Electronic energy + Delta-G solvation = -13110.115650 eV Core-core repulsion = 10766.857536 eV Total energy + Delta-G solvation = -2343.258114 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.30264 -36.23367 -34.10097 -32.56759 -30.05949 -28.11195 -25.71165 -24.36050 -21.65678 -20.53623 -19.51096 -17.25460 -16.42985 -15.77149 -15.36009 -14.90399 -14.39915 -13.97888 -13.72705 -13.05648 -12.58849 -12.16015 -11.88088 -11.81401 -11.63217 -11.30565 -11.12529 -10.82391 -10.44503 -10.04109 -10.00650 -9.93170 -9.09215 -8.96763 -7.64755 -7.22495 -6.70528 -4.42596 1.86661 2.35747 2.97582 3.10455 3.11406 3.16380 3.96858 4.08021 4.17889 4.63990 4.78837 4.98913 5.14634 5.21019 5.42300 5.50798 5.66825 5.75653 5.84057 6.05702 6.25071 6.96707 7.22641 7.33397 7.61459 7.86004 8.39728 8.71701 8.90028 9.52227 10.33920 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.081217 B = 0.005937 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.674687 B = 4714.837416 C = 4778.910228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.059 3.941 3 Si 0.931 3.069 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.417 4.417 8 H 0.079 0.921 9 C 0.134 3.866 10 C -0.189 4.189 11 O -0.227 6.227 12 C 0.131 3.869 13 C 0.017 3.983 14 H 0.109 0.891 15 C -0.123 4.123 16 C -0.067 4.067 17 S -0.304 6.304 18 C -0.061 4.061 19 N -0.505 5.505 20 H 0.279 0.721 21 H 0.231 0.769 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -9.264 1.263 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.152 4.152 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.452 4.452 8 H 0.097 0.903 9 C 0.019 3.981 10 C -0.259 4.259 11 O -0.114 6.114 12 C -0.075 4.075 13 C -0.004 4.004 14 H 0.127 0.873 15 C -0.163 4.163 16 C -0.215 4.215 17 S -0.078 6.078 18 C -0.210 4.210 19 N -0.241 5.241 20 H 0.090 0.910 21 H 0.247 0.753 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.712 -10.189 0.662 10.235 hybrid contribution 0.207 2.044 0.560 2.130 sum -0.505 -8.145 1.221 8.251 Atomic orbital electron populations 1.69270 1.07369 1.28647 1.41443 1.25673 0.94921 1.01173 0.93446 0.85925 0.79788 0.79697 0.78945 1.19664 1.20364 1.18834 1.18516 0.94336 0.87547 1.44771 0.90300 1.19388 0.90083 0.89826 0.98837 1.26705 0.99941 0.78628 1.20634 1.84076 1.34049 1.21440 1.71848 1.24737 0.80381 0.94758 1.07659 1.20133 1.01960 0.85208 0.93050 0.87257 1.22646 1.03269 0.92113 0.98228 1.24235 1.04561 0.98964 0.93742 1.87422 1.81308 1.25669 1.13420 1.24125 1.03627 0.93267 0.99947 1.70716 1.32063 1.00985 1.20371 0.90985 0.75320 0.89171 0.89537 0.88937 0.87851 0.88149 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.82 10.34 55.54 0.57 -21.25 15 2 C 0.06 1.54 5.49 -17.35 -0.10 1.44 15 3 Si 0.93 19.54 29.56 -169.99 -5.02 14.51 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 7 C -0.42 -11.76 9.49 -37.88 -0.36 -12.12 15 8 H 0.08 2.18 7.84 -52.48 -0.41 1.76 15 9 C 0.13 3.83 6.89 -84.54 -0.58 3.25 15 10 C -0.19 -5.14 11.18 30.94 0.35 -4.80 15 11 O -0.23 -5.59 10.56 6.04 0.06 -5.53 15 12 C 0.13 2.98 6.66 -13.09 -0.09 2.89 15 13 C 0.02 0.29 3.08 -90.66 -0.28 0.01 15 14 H 0.11 1.72 8.14 -51.93 -0.42 1.30 15 15 C -0.12 -1.72 5.77 -25.16 -0.15 -1.87 15 16 C -0.07 -0.76 7.38 38.29 0.28 -0.48 15 17 S -0.30 -4.24 23.26 -107.50 -2.50 -6.74 15 18 C -0.06 -0.93 6.80 37.82 0.26 -0.68 15 19 N -0.50 -13.31 11.36 -8.64 -0.10 -13.40 15 20 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 21 H 0.23 6.26 5.78 -52.49 -0.30 5.96 15 22 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.09 1.31 8.10 -51.93 -0.42 0.89 15 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.10 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.10 1.68 7.75 -51.93 -0.40 1.27 15 27 H 0.10 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 247.62 15.07 3.73 3.73 Total: -1.00 -29.57 247.62 -6.70 -36.27 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -2.79 Total: 4.75 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.66 Total: -12.35 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.48 Total: -34.65 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.06 Total: -5.53 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.50 Total: -6.74 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.57 -6.70 -36.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.263 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds