Wall clock time and date at job start Mon Mar 30 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30996 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48501 * 109.46892 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47236 * 29.99722 * 3 2 1 6 6 H 1.48504 * 109.47035 * 149.99619 * 3 2 1 7 7 C 1.39725 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.41254 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.38794 * 126.67558 * 0.02562 * 9 7 2 11 11 O 1.34422 * 106.50862 * 179.97438 * 10 9 7 12 12 C 1.34059 * 108.38603 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.07995 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.60625 * 179.68828 * 13 12 11 15 15 C 1.53859 * 109.60952 * 300.02195 * 13 12 11 16 16 C 1.55133 * 106.93248 * 166.98076 * 15 13 12 17 17 S 1.83495 * 102.19055 * 317.92735 * 16 15 13 18 18 C 1.54272 * 109.46936 * 59.43716 * 13 12 11 19 19 N 1.29915 * 109.84257 * 0.26591 * 12 11 10 20 20 H 0.96997 * 120.00226 * 0.02562 * 1 2 3 21 21 H 1.07997 * 126.74964 * 359.97438 * 10 9 7 22 22 H 1.09002 * 109.97645 * 286.36270 * 15 13 12 23 23 H 1.08997 * 109.97663 * 47.60174 * 15 13 12 24 24 H 1.08997 * 110.86096 * 76.08264 * 16 15 13 25 25 H 1.09003 * 110.86007 * 199.72673 * 16 15 13 26 26 H 1.09002 * 110.39656 * 331.00776 * 18 13 12 27 27 H 1.08997 * 110.40180 * 93.41805 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4413 2.6527 0.7000 6 1 3.5414 1.4403 0.7001 7 6 2.0086 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0010 9 6 1.3024 -2.4334 0.0005 10 6 -0.0761 -2.5948 -0.0005 11 8 -0.3056 -3.9193 -0.0006 12 6 0.8757 -4.5531 -0.0003 13 6 1.0558 -6.0493 -0.0009 14 1 2.1189 -6.2897 -0.0061 15 6 0.3969 -6.6492 1.2534 16 6 0.3202 -8.1830 1.0337 17 16 -0.2050 -8.2974 -0.7208 18 6 0.3836 -6.6476 -1.2540 19 7 1.8420 -3.6848 0.0057 20 1 -0.4850 0.8400 -0.0004 21 1 -0.8186 -1.8105 -0.0010 22 1 1.0015 -6.4289 2.1331 23 1 -0.6056 -6.2405 1.3790 24 1 1.2970 -8.6450 1.1770 25 1 -0.4233 -8.6327 1.6919 26 1 -0.4564 -6.0275 -1.5672 27 1 1.1072 -6.7456 -2.0632 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:40 Heat of formation + Delta-G solvation = -22.100372 kcal Electronic energy + Delta-G solvation = -13110.986926 eV Core-core repulsion = 10766.857536 eV Total energy + Delta-G solvation = -2344.129390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.25794 -37.53694 -36.11034 -34.55350 -31.40471 -29.89210 -27.56983 -25.79738 -23.17739 -22.46186 -21.22885 -19.09420 -17.72384 -17.48002 -17.02193 -16.76371 -16.01558 -15.50765 -15.00446 -14.74105 -14.11946 -13.68562 -13.40033 -13.06582 -12.99545 -12.87741 -12.77028 -12.36151 -12.00642 -11.93792 -11.89130 -11.11672 -11.02324 -10.97769 -9.26424 -8.73315 -8.67312 -6.53574 0.74905 1.01366 1.30919 1.39010 1.45120 1.54645 2.14221 2.20138 2.43653 3.27755 3.29410 3.52638 3.78518 3.94161 4.08033 4.18534 4.56025 4.59570 4.72356 4.86584 4.91399 5.05451 5.30643 5.33829 5.57534 5.80937 6.29427 6.67627 6.83098 7.49684 8.38205 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.081217 B = 0.005937 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.674687 B = 4714.837416 C = 4778.910228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.020 3.980 3 Si 1.008 2.992 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.072 0.928 9 C 0.107 3.893 10 C -0.224 4.224 11 O -0.230 6.230 12 C 0.160 3.840 13 C 0.015 3.985 14 H 0.124 0.876 15 C -0.120 4.120 16 C -0.050 4.050 17 S -0.310 6.310 18 C -0.060 4.060 19 N -0.540 5.540 20 H 0.291 0.709 21 H 0.224 0.776 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.080 0.920 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -9.930 1.792 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.090 0.910 9 C -0.008 4.008 10 C -0.293 4.293 11 O -0.118 6.118 12 C -0.048 4.048 13 C -0.005 4.005 14 H 0.142 0.858 15 C -0.159 4.159 16 C -0.198 4.198 17 S -0.084 6.084 18 C -0.209 4.209 19 N -0.276 5.276 20 H 0.102 0.898 21 H 0.239 0.761 22 H 0.120 0.880 23 H 0.091 0.909 24 H 0.136 0.864 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.238 -10.859 1.191 10.927 hybrid contribution 0.024 2.133 0.408 2.172 sum -0.213 -8.726 1.600 8.874 Atomic orbital electron populations 1.69326 1.08680 1.30342 1.39953 1.26710 0.95888 1.04470 0.91908 0.84796 0.78337 0.74608 0.79420 1.18685 1.18661 1.18608 1.18826 0.94341 0.88856 1.47232 0.90966 1.19802 0.90916 0.90896 0.99147 1.26449 0.99490 0.79540 1.23833 1.84061 1.34804 1.20652 1.72332 1.25997 0.79121 0.96901 1.02771 1.20529 1.03499 0.81133 0.95372 0.85793 1.22602 1.02288 0.93976 0.97052 1.24344 1.06739 0.96794 0.91890 1.87502 1.81573 1.23672 1.15674 1.23980 1.03096 0.94186 0.99604 1.70726 1.33227 1.00930 1.22692 0.89815 0.76084 0.88004 0.90941 0.86384 0.85402 0.90098 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.05 10.34 21.79 0.23 -44.83 15 2 C 0.02 1.05 5.49 85.18 0.47 1.52 15 3 Si 1.01 39.63 29.56 68.60 2.03 41.66 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 7 C -0.46 -26.64 9.49 23.37 0.22 -26.42 15 8 H 0.07 4.12 7.84 -2.91 -0.02 4.10 15 9 C 0.11 6.32 6.89 39.33 0.27 6.59 15 10 C -0.22 -12.68 11.18 67.95 0.76 -11.92 15 11 O -0.23 -11.68 10.56 -1.31 -0.01 -11.69 15 12 C 0.16 7.35 6.66 88.39 0.59 7.94 15 13 C 0.02 0.49 3.08 -10.82 -0.03 0.45 15 14 H 0.12 3.65 8.14 -2.39 -0.02 3.63 15 15 C -0.12 -3.08 5.77 31.61 0.18 -2.89 15 16 C -0.05 -0.96 7.38 72.71 0.54 -0.42 15 17 S -0.31 -7.89 23.26 -56.49 -1.31 -9.21 15 18 C -0.06 -1.76 6.80 72.41 0.49 -1.27 15 19 N -0.54 -29.11 11.36 -296.17 -3.36 -32.47 15 20 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 21 H 0.22 12.69 5.78 -2.91 -0.02 12.67 15 22 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.07 2.09 8.10 -2.39 -0.02 2.07 15 24 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.08 2.70 7.75 -2.39 -0.02 2.69 15 27 H 0.11 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -65.56 247.62 2.23 -63.34 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.18 Total: 19.63 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.49 Total: -26.43 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.14 Total: -77.30 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.01 Total: -11.69 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.31 Total: -9.21 kcal Total: -65.56 2.23 -63.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.238 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds