Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48502 * 109.46968 * 239.99955 * 3 2 1 5 5 H 1.48501 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48488 * 109.47314 * 119.99961 * 3 2 1 7 7 C 1.40167 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.39846 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.39423 * 126.87343 * 359.97438 * 9 7 2 11 11 N 1.33329 * 107.08494 * 179.97438 * 10 9 7 12 12 C 1.30810 * 109.25207 * 359.97438 * 11 10 9 13 13 C 1.50693 * 125.15221 * 179.97438 * 12 11 10 14 14 H 1.09008 * 108.82971 * 178.55717 * 13 12 11 15 15 C 1.52333 * 108.86833 * 60.03108 * 13 12 11 16 16 C 1.54260 * 112.47388 * 239.39221 * 15 13 12 17 17 S 1.83763 * 102.67096 * 335.32779 * 16 15 13 18 18 C 1.54259 * 108.75745 * 297.02167 * 13 12 11 19 19 O 1.34013 * 109.69146 * 0.26575 * 12 11 10 20 20 H 0.96996 * 119.99956 * 0.02562 * 1 2 3 21 21 H 1.07999 * 126.45547 * 359.97438 * 10 9 7 22 22 H 1.09002 * 108.86808 * 0.14161 * 15 13 12 23 23 H 1.09004 * 108.87242 * 118.64722 * 15 13 12 24 24 H 1.09007 * 110.78707 * 93.67041 * 16 15 13 25 25 H 1.09001 * 110.79108 * 217.12161 * 16 15 13 26 26 H 1.08996 * 110.78994 * 263.54312 * 18 13 12 27 27 H 1.09002 * 110.78619 * 26.81145 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.0957 1.6964 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0957 1.6965 1.2124 7 6 2.0089 -1.2139 0.0005 8 1 3.0888 -1.2138 0.0010 9 6 1.3097 -2.4250 0.0016 10 6 -0.0746 -2.5918 0.0028 11 7 -0.3109 -3.9040 0.0030 12 6 0.8280 -4.5474 0.0015 13 6 0.9774 -6.0469 0.0017 14 1 2.0385 -6.2948 -0.0258 15 6 0.3078 -6.6089 -1.2458 16 6 -0.8230 -7.6033 -0.9111 17 16 -0.3451 -8.2106 0.7562 18 6 0.3681 -6.6059 1.3040 19 8 1.8418 -3.6710 0.0061 20 1 -0.4850 0.8400 -0.0004 21 1 -0.8156 -1.8062 0.0034 22 1 -0.1079 -5.7841 -1.8247 23 1 1.0586 -7.1190 -1.8495 24 1 -1.7870 -7.0956 -0.8766 25 1 -0.8420 -8.4235 -1.6288 26 1 1.1409 -6.7628 2.0564 27 1 -0.4096 -5.9428 1.6830 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260343107.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -22.702053 kcal Electronic energy + Delta-G solvation = -13161.014868 eV Core-core repulsion = 10816.859387 eV Total energy + Delta-G solvation = -2344.155481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10313 -37.52432 -35.99800 -34.64349 -31.45884 -30.40011 -27.45563 -25.69261 -23.01382 -22.66775 -20.59431 -19.57828 -17.93209 -17.50691 -16.99329 -16.70788 -15.76431 -15.21380 -15.13333 -14.61148 -14.05459 -13.97709 -13.25297 -13.07160 -12.86696 -12.78493 -12.72163 -12.52596 -12.04692 -11.76800 -11.60477 -11.42796 -11.00482 -10.80882 -9.40752 -8.82867 -8.76106 -6.63819 0.86430 0.98408 1.27248 1.36586 1.53575 1.62982 2.08945 2.36366 2.59872 3.04393 3.45147 3.78931 3.95362 4.03988 4.17298 4.23935 4.51095 4.73075 4.79095 4.87531 5.05821 5.11613 5.15535 5.36821 5.52706 6.13318 6.28298 6.44268 6.62001 7.63315 8.14822 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.079483 B = 0.006076 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.192806 B = 4607.268490 C = 4681.078106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.028 3.972 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.255 1.255 7 C -0.454 4.454 8 H 0.091 0.909 9 C 0.116 3.884 10 C -0.211 4.211 11 N -0.465 5.465 12 C 0.030 3.970 13 C 0.034 3.966 14 H 0.106 0.894 15 C -0.111 4.111 16 C -0.049 4.049 17 S -0.308 6.308 18 C -0.046 4.046 19 O -0.258 6.258 20 H 0.299 0.701 21 H 0.180 0.820 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.118 0.882 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -6.411 -1.411 6.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.188 4.188 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.109 0.891 9 C 0.063 3.937 10 C -0.355 4.355 11 N -0.193 5.193 12 C -0.172 4.172 13 C 0.013 3.987 14 H 0.125 0.875 15 C -0.150 4.150 16 C -0.197 4.197 17 S -0.082 6.082 18 C -0.195 4.195 19 O -0.151 6.151 20 H 0.110 0.890 21 H 0.197 0.803 22 H 0.080 0.920 23 H 0.123 0.877 24 H 0.103 0.897 25 H 0.153 0.847 26 H 0.136 0.864 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.865 -7.757 -0.853 7.852 hybrid contribution 0.776 2.300 -0.397 2.460 sum 1.641 -5.457 -1.250 5.834 Atomic orbital electron populations 1.69621 1.09278 1.31533 1.33271 1.27048 0.95962 1.04728 0.91066 0.84661 0.78129 0.72870 0.80451 1.17841 1.18298 1.17902 1.18856 0.95563 0.87568 1.46342 0.89061 1.21169 0.93276 0.82502 0.96716 1.24014 0.95224 0.91370 1.24918 1.69470 1.28399 1.06768 1.14697 1.25620 0.80507 0.94144 1.16887 1.19933 1.02800 0.81496 0.94476 0.87547 1.21988 0.98073 0.98536 0.96447 1.24149 1.00659 1.01062 0.93815 1.87629 1.79578 1.19664 1.21298 1.24164 1.02450 0.93782 0.99075 1.84321 1.38591 1.16695 1.75482 0.88964 0.80323 0.92030 0.87741 0.89701 0.84720 0.86403 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.25 10.32 21.87 0.23 -41.03 15 2 C 0.03 1.36 5.50 85.31 0.47 1.82 15 3 Si 1.02 35.83 29.56 68.60 2.03 37.85 15 4 H -0.25 -8.57 7.11 99.48 0.71 -7.87 15 5 H -0.26 -8.40 7.11 99.48 0.71 -7.70 15 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 7 C -0.45 -24.64 9.45 23.13 0.22 -24.42 15 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 15 9 C 0.12 6.73 7.08 22.94 0.16 6.89 15 10 C -0.21 -12.34 10.89 84.75 0.92 -11.42 15 11 N -0.47 -24.90 10.94 -300.12 -3.28 -28.18 15 12 C 0.03 1.47 6.30 88.26 0.56 2.03 15 13 C 0.03 1.21 3.11 -11.34 -0.04 1.17 15 14 H 0.11 3.36 8.14 -2.38 -0.02 3.34 15 15 C -0.11 -3.30 5.97 30.80 0.18 -3.12 15 16 C -0.05 -1.25 7.44 72.41 0.54 -0.71 15 17 S -0.31 -8.83 23.26 -56.49 -1.31 -10.14 15 18 C -0.05 -1.50 6.91 72.41 0.50 -1.00 15 19 O -0.26 -14.08 10.81 -11.86 -0.13 -14.20 15 20 H 0.30 13.40 8.30 -92.71 -0.77 12.63 15 21 H 0.18 10.75 5.76 -2.91 -0.02 10.74 15 22 H 0.06 2.16 7.43 -2.39 -0.02 2.15 15 23 H 0.10 2.48 8.14 -2.38 -0.02 2.46 15 24 H 0.08 2.31 8.14 -2.38 -0.02 2.29 15 25 H 0.13 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.12 3.40 8.14 -2.39 -0.02 3.38 15 27 H 0.07 2.85 7.70 -2.39 -0.02 2.83 15 Total: -1.00 -63.22 246.62 2.22 -60.99 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 1.18 Total: 23.47 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.52 Total: -28.76 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -3.06 Total: -69.21 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.13 Total: -14.20 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.31 Total: -10.14 kcal Total: -63.22 2.22 -60.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343107.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.290 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds