Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48493 * 109.46980 * 239.99851 * 3 2 1 5 5 H 1.48492 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46700 * 120.00180 * 3 2 1 7 7 C 1.40174 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99431 * 180.02562 * 7 2 1 9 9 C 1.39844 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.39425 * 126.87084 * 0.03103 * 9 7 2 11 11 N 1.33327 * 107.07975 * 179.73364 * 10 9 7 12 12 C 1.30798 * 109.25538 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.15244 * 179.97438 * 12 11 10 14 14 H 1.09000 * 108.82774 * 181.44777 * 13 12 11 15 15 C 1.52331 * 108.86923 * 299.98259 * 13 12 11 16 16 C 1.54253 * 112.59194 * 120.81821 * 15 13 12 17 17 S 1.83964 * 102.58117 * 24.52664 * 16 15 13 18 18 C 1.54257 * 108.86625 * 63.05618 * 13 12 11 19 19 O 1.34014 * 109.69385 * 0.02562 * 12 11 10 20 20 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.45739 * 359.71122 * 10 9 7 22 22 H 1.09000 * 108.86549 * 241.63811 * 15 13 12 23 23 H 1.09000 * 108.87013 * 0.13580 * 15 13 12 24 24 H 1.09001 * 110.78991 * 142.79267 * 16 15 13 25 25 H 1.08994 * 110.79165 * 266.25493 * 16 15 13 26 26 H 1.08998 * 110.78758 * 332.92429 * 18 13 12 27 27 H 1.08996 * 110.78933 * 96.37975 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0958 1.6962 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0958 1.6962 1.2125 7 6 2.0088 -1.2140 -0.0005 8 1 3.0888 -1.2140 -0.0001 9 6 1.3095 -2.4251 -0.0005 10 6 -0.0748 -2.5918 -0.0006 11 7 -0.3111 -3.9039 -0.0065 12 6 0.8277 -4.5474 -0.0106 13 6 0.9770 -6.0469 -0.0171 14 1 2.0381 -6.2949 0.0067 15 6 0.3104 -6.6138 1.2298 16 6 -0.8183 -7.6112 0.8969 17 16 -0.3425 -8.2110 -0.7758 18 6 0.3667 -6.6033 -1.3201 19 8 1.8415 -3.6710 -0.0069 20 1 -0.4850 0.8401 0.0004 21 1 -0.8158 -1.8062 0.0036 22 1 1.0636 -7.1220 1.8320 23 1 -0.1082 -5.7918 1.8104 24 1 -0.8321 -8.4329 1.6130 25 1 -1.7840 -7.1067 0.8667 26 1 -0.4151 -5.9423 -1.6941 27 1 1.1387 -6.7565 -2.0742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260343113.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -3.896861 kcal Electronic energy + Delta-G solvation = -13158.901894 eV Core-core repulsion = 10815.561867 eV Total energy + Delta-G solvation = -2343.340027 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09322 -36.06975 -34.08484 -32.64650 -29.91066 -28.66039 -25.78601 -24.06839 -21.21569 -20.78609 -18.88852 -17.63139 -16.38230 -15.97085 -15.32468 -14.78653 -14.30499 -13.72760 -13.54524 -12.96713 -12.45506 -12.12310 -11.67412 -11.58139 -11.52252 -11.37916 -11.22573 -10.73064 -10.39442 -10.34143 -9.83205 -9.68409 -9.45697 -8.77086 -7.53806 -7.36708 -6.98144 -4.61807 2.13488 2.47910 2.77624 2.93287 2.96949 3.29442 3.69189 4.30021 4.39302 4.84577 5.05489 5.10020 5.34898 5.43951 5.55350 5.69344 5.83599 6.01038 6.06621 6.37168 6.50838 6.81628 7.13609 7.38256 7.51191 8.11467 8.27189 8.50330 8.63922 9.66961 9.96762 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.079462 B = 0.006073 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.287065 B = 4609.453125 C = 4682.780404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.069 3.931 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.145 3.855 10 C -0.172 4.172 11 N -0.448 5.448 12 C 0.010 3.990 13 C 0.038 3.962 14 H 0.087 0.913 15 C -0.114 4.114 16 C -0.054 4.054 17 S -0.324 6.324 18 C -0.044 4.044 19 O -0.243 6.243 20 H 0.287 0.713 21 H 0.193 0.807 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -5.924 1.034 6.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.150 4.150 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.103 0.897 9 C 0.092 3.908 10 C -0.318 4.318 11 N -0.177 5.177 12 C -0.190 4.190 13 C 0.016 3.984 14 H 0.105 0.895 15 C -0.154 4.154 16 C -0.202 4.202 17 S -0.098 6.098 18 C -0.192 4.192 19 O -0.135 6.135 20 H 0.098 0.902 21 H 0.210 0.790 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.008 -7.272 0.475 7.287 hybrid contribution 1.105 2.266 0.512 2.573 sum 1.113 -5.005 0.987 5.222 Atomic orbital electron populations 1.69571 1.07618 1.29739 1.34185 1.25863 0.95090 1.01427 0.92585 0.85816 0.79441 0.78195 0.80105 1.18671 1.19852 1.18684 1.18370 0.94899 0.86909 1.45038 0.89749 1.20733 0.92894 0.81625 0.95548 1.24165 0.95148 0.90664 1.21856 1.69496 1.27446 1.07381 1.13384 1.24320 0.81511 0.92160 1.20982 1.19488 1.00964 0.85378 0.92535 0.89456 1.22023 0.96852 0.98700 0.97803 1.24090 1.01816 1.00538 0.93753 1.87664 1.80023 1.21677 1.20405 1.24309 1.02613 0.92908 0.99392 1.84312 1.37635 1.16539 1.74971 0.90157 0.79027 0.90842 0.89575 0.88215 0.89020 0.88136 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.57 10.32 55.56 0.57 -19.00 15 2 C 0.07 1.67 5.50 -17.26 -0.09 1.58 15 3 Si 0.94 17.91 29.56 -169.99 -5.03 12.88 15 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 7 C -0.42 -11.19 9.45 -38.25 -0.36 -11.55 15 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 15 9 C 0.15 4.06 7.08 -38.54 -0.27 3.79 15 10 C -0.17 -4.79 10.89 -16.46 -0.18 -4.97 15 11 N -0.45 -11.62 10.95 -10.02 -0.11 -11.73 15 12 C 0.01 0.23 6.31 -12.72 -0.08 0.15 15 13 C 0.04 0.69 3.11 -91.46 -0.28 0.40 15 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 15 C -0.11 -1.81 5.97 -26.42 -0.16 -1.97 15 16 C -0.05 -0.76 7.46 37.81 0.28 -0.48 15 17 S -0.32 -5.04 23.27 -107.50 -2.50 -7.54 15 18 C -0.04 -0.74 6.91 37.82 0.26 -0.48 15 19 O -0.24 -6.48 10.81 3.11 0.03 -6.45 15 20 H 0.29 6.40 8.30 -40.82 -0.34 6.07 15 21 H 0.19 5.46 5.76 -52.49 -0.30 5.15 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.09 1.55 7.42 -51.93 -0.39 1.16 15 24 H 0.10 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.10 1.90 7.72 -51.93 -0.40 1.50 15 27 H 0.10 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -28.39 246.65 -6.95 -35.34 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.75 Total: 6.31 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.89 Total: -13.53 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.46 Total: -30.73 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.03 Total: -6.45 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.50 Total: -7.54 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.39 -6.95 -35.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343113.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.444 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds