Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48493 * 109.46980 * 239.99851 * 3 2 1 5 5 H 1.48492 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46700 * 120.00180 * 3 2 1 7 7 C 1.40174 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99431 * 180.02562 * 7 2 1 9 9 C 1.39844 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.39425 * 126.87084 * 0.03103 * 9 7 2 11 11 N 1.33327 * 107.07975 * 179.73364 * 10 9 7 12 12 C 1.30798 * 109.25538 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.15244 * 179.97438 * 12 11 10 14 14 H 1.09000 * 108.82774 * 181.44777 * 13 12 11 15 15 C 1.52331 * 108.86923 * 299.98259 * 13 12 11 16 16 C 1.54253 * 112.59194 * 120.81821 * 15 13 12 17 17 S 1.83964 * 102.58117 * 24.52664 * 16 15 13 18 18 C 1.54257 * 108.86625 * 63.05618 * 13 12 11 19 19 O 1.34014 * 109.69385 * 0.02562 * 12 11 10 20 20 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.45739 * 359.71122 * 10 9 7 22 22 H 1.09000 * 108.86549 * 241.63811 * 15 13 12 23 23 H 1.09000 * 108.87013 * 0.13580 * 15 13 12 24 24 H 1.09001 * 110.78991 * 142.79267 * 16 15 13 25 25 H 1.08994 * 110.79165 * 266.25493 * 16 15 13 26 26 H 1.08998 * 110.78758 * 332.92429 * 18 13 12 27 27 H 1.08996 * 110.78933 * 96.37975 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0958 1.6962 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0958 1.6962 1.2125 7 6 2.0088 -1.2140 -0.0005 8 1 3.0888 -1.2140 -0.0001 9 6 1.3095 -2.4251 -0.0005 10 6 -0.0748 -2.5918 -0.0006 11 7 -0.3111 -3.9039 -0.0065 12 6 0.8277 -4.5474 -0.0106 13 6 0.9770 -6.0469 -0.0171 14 1 2.0381 -6.2949 0.0067 15 6 0.3104 -6.6138 1.2298 16 6 -0.8183 -7.6112 0.8969 17 16 -0.3425 -8.2110 -0.7758 18 6 0.3667 -6.6033 -1.3201 19 8 1.8415 -3.6710 -0.0069 20 1 -0.4850 0.8401 0.0004 21 1 -0.8158 -1.8062 0.0036 22 1 1.0636 -7.1220 1.8320 23 1 -0.1082 -5.7918 1.8104 24 1 -0.8321 -8.4329 1.6130 25 1 -1.7840 -7.1067 0.8667 26 1 -0.4151 -5.9423 -1.6941 27 1 1.1387 -6.7565 -2.0742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260343113.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -22.631877 kcal Electronic energy + Delta-G solvation = -13159.714305 eV Core-core repulsion = 10815.561867 eV Total energy + Delta-G solvation = -2344.152438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.10439 -37.52076 -35.99786 -34.64487 -31.45816 -30.40299 -27.45686 -25.68724 -23.01314 -22.66714 -20.59468 -19.57848 -17.93065 -17.50701 -16.99525 -16.70519 -15.76446 -15.21329 -15.13380 -14.61184 -14.05454 -13.97635 -13.25236 -13.07220 -12.87047 -12.78611 -12.72090 -12.52731 -12.04717 -11.76829 -11.60446 -11.42739 -11.00070 -10.80888 -9.40797 -8.82911 -8.76250 -6.63836 0.86161 0.98313 1.27170 1.36585 1.53615 1.62998 2.08958 2.36343 2.59843 3.04389 3.45144 3.78954 3.95315 4.03976 4.17199 4.24040 4.51081 4.72968 4.79026 4.87505 5.05692 5.11586 5.15524 5.36790 5.52695 6.13296 6.28288 6.44269 6.61975 7.63337 8.14774 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.079462 B = 0.006073 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.287065 B = 4609.453125 C = 4682.780404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.028 3.972 3 Si 1.022 2.978 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.454 4.454 8 H 0.091 0.909 9 C 0.116 3.884 10 C -0.211 4.211 11 N -0.465 5.465 12 C 0.030 3.970 13 C 0.034 3.966 14 H 0.106 0.894 15 C -0.112 4.112 16 C -0.048 4.048 17 S -0.310 6.310 18 C -0.046 4.046 19 O -0.258 6.258 20 H 0.299 0.701 21 H 0.180 0.820 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.135 0.865 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -6.405 1.384 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.188 4.188 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.109 0.891 9 C 0.063 3.937 10 C -0.355 4.355 11 N -0.193 5.193 12 C -0.172 4.172 13 C 0.013 3.987 14 H 0.124 0.876 15 C -0.151 4.151 16 C -0.196 4.196 17 S -0.084 6.084 18 C -0.194 4.194 19 O -0.151 6.151 20 H 0.110 0.890 21 H 0.197 0.803 22 H 0.122 0.878 23 H 0.080 0.920 24 H 0.153 0.847 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.867 -7.750 0.824 7.842 hybrid contribution 0.776 2.295 0.408 2.457 sum 1.643 -5.454 1.232 5.828 Atomic orbital electron populations 1.69624 1.09282 1.31532 1.33256 1.27051 0.95964 1.04731 0.91065 0.84659 0.78127 0.72864 0.80452 1.17899 1.18295 1.17841 1.18859 0.95563 0.87569 1.46340 0.89061 1.21168 0.93279 0.82503 0.96709 1.24013 0.95222 0.91368 1.24931 1.69464 1.28406 1.06773 1.14688 1.25609 0.80504 0.94139 1.16905 1.19924 1.02798 0.81508 0.94465 0.87571 1.21987 0.98126 0.98505 0.96467 1.24172 1.00657 1.01063 0.93666 1.87654 1.79799 1.19697 1.21216 1.24163 1.02451 0.93727 0.99079 1.84320 1.38586 1.16696 1.75484 0.88963 0.80322 0.87753 0.92047 0.84699 0.89682 0.90667 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.24 10.32 21.87 0.23 -41.01 15 2 C 0.03 1.35 5.50 85.32 0.47 1.82 15 3 Si 1.02 35.82 29.56 68.60 2.03 37.85 15 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 15 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 7 C -0.45 -24.64 9.45 23.13 0.22 -24.42 15 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 15 9 C 0.12 6.73 7.08 22.94 0.16 6.90 15 10 C -0.21 -12.35 10.89 84.75 0.92 -11.43 15 11 N -0.47 -24.90 10.95 -300.13 -3.29 -28.18 15 12 C 0.03 1.47 6.31 88.26 0.56 2.03 15 13 C 0.03 1.21 3.11 -11.33 -0.04 1.18 15 14 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 15 C -0.11 -3.31 5.97 30.80 0.18 -3.13 15 16 C -0.05 -1.22 7.46 72.41 0.54 -0.68 15 17 S -0.31 -8.88 23.27 -56.49 -1.31 -10.20 15 18 C -0.05 -1.49 6.91 72.41 0.50 -0.99 15 19 O -0.26 -14.08 10.81 -11.78 -0.13 -14.20 15 20 H 0.30 13.40 8.30 -92.71 -0.77 12.63 15 21 H 0.18 10.75 5.76 -2.91 -0.02 10.74 15 22 H 0.10 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.06 2.16 7.42 -2.39 -0.02 2.14 15 24 H 0.13 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.07 2.85 7.72 -2.39 -0.02 2.83 15 27 H 0.12 3.41 8.14 -2.39 -0.02 3.39 15 Total: -1.00 -63.23 246.65 2.22 -61.01 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 1.18 Total: 23.47 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 3.52 Total: -28.72 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -3.06 Total: -69.20 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.13 Total: -14.20 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.31 Total: -10.20 kcal Total: -63.23 2.22 -61.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343113.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds