Wall clock time and date at job start Mon Mar 30 2020 02:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47346 * 275.00242 * 3 2 1 5 5 H 1.48505 * 109.47048 * 35.00556 * 3 2 1 6 6 H 1.48499 * 109.46782 * 154.99896 * 3 2 1 7 7 C 1.40321 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00118 * 174.94691 * 7 2 1 9 9 C 1.41785 * 119.99807 * 354.94067 * 7 2 1 10 10 O 1.21843 * 120.00194 * 5.06577 * 9 7 2 11 11 C 1.47428 * 120.00070 * 185.06105 * 9 7 2 12 12 C 1.39884 * 120.21660 * 354.19547 * 11 9 7 13 13 C 1.37632 * 119.94218 * 180.27269 * 12 11 9 14 14 C 1.38798 * 120.39629 * 0.02995 * 13 12 11 15 15 C 1.38018 * 120.44509 * 359.94908 * 14 13 12 16 16 Cl 1.73600 * 119.97585 * 180.02562 * 15 14 13 17 17 C 1.39080 * 120.04631 * 0.05017 * 15 14 13 18 18 N 1.38768 * 120.19499 * 179.97438 * 17 15 14 19 19 H 0.97003 * 120.00194 * 359.97438 * 1 2 3 20 20 H 1.08008 * 120.02768 * 0.25988 * 12 11 9 21 21 H 1.08002 * 119.79913 * 180.02562 * 13 12 11 22 22 H 1.08001 * 119.77757 * 179.97438 * 14 13 12 23 23 H 0.96993 * 120.00484 * 335.08655 * 18 17 15 24 24 H 0.97008 * 119.99567 * 155.08788 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 2.3811 2.1076 -1.3947 5 1 1.4936 2.6199 0.8032 6 1 3.5857 1.4120 0.5917 7 6 2.0070 -1.2152 -0.0005 8 1 3.0839 -1.2170 -0.0829 9 6 1.3022 -2.4407 0.1072 10 8 0.0838 -2.4449 0.1073 11 6 2.0436 -3.7101 0.2190 12 6 3.4371 -3.7245 0.0978 13 6 4.1231 -4.9136 0.1976 14 6 3.4404 -6.1019 0.4176 15 6 2.0657 -6.1063 0.5401 16 17 1.2242 -7.5995 0.8158 17 6 1.3540 -4.9154 0.4424 18 7 -0.0283 -4.9163 0.5646 19 1 -0.4850 0.8401 0.0004 20 1 3.9742 -2.8034 -0.0741 21 1 5.1990 -4.9220 0.1041 22 1 3.9887 -7.0292 0.4938 23 1 -0.5329 -5.7188 0.3589 24 1 -0.4900 -4.1143 0.8557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663035.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:25 Heat of formation + Delta-G solvation = -47.459741 kcal Electronic energy + Delta-G solvation = -12886.035267 eV Core-core repulsion = 10402.929411 eV Total energy + Delta-G solvation = -2483.105856 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51262 -38.23813 -37.14178 -35.42898 -34.55542 -31.96583 -29.52923 -28.53363 -24.57122 -23.00997 -21.52689 -18.62303 -18.23380 -17.47572 -17.26207 -16.31471 -15.55009 -15.17225 -14.90419 -14.76786 -14.35388 -13.80919 -13.31870 -12.94808 -12.78099 -12.55547 -12.27649 -12.12656 -11.99590 -11.76176 -11.32898 -10.96705 -9.55278 -9.51675 -8.43277 -8.30124 -7.01644 0.20701 0.64380 1.27941 1.39108 1.40565 1.56734 2.22417 2.23933 2.88502 3.18410 3.75477 4.00781 4.26896 4.48874 4.55799 4.80123 5.06640 5.19730 5.28495 5.46874 5.74139 5.98378 6.02667 6.64568 6.74254 6.77343 7.12485 8.27155 8.50544 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.007927 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.694229 B = 3531.236364 C = 4078.420192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.375 3.625 10 O -0.586 6.586 11 C -0.216 4.216 12 C -0.049 4.049 13 C -0.172 4.172 14 C -0.060 4.060 15 C -0.135 4.135 16 Cl -0.074 7.074 17 C 0.233 3.767 18 N -0.858 5.858 19 H 0.280 0.720 20 H 0.136 0.864 21 H 0.162 0.838 22 H 0.159 0.841 23 H 0.394 0.606 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -7.587 0.980 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.276 3.724 10 O -0.480 6.480 11 C -0.223 4.223 12 C -0.068 4.068 13 C -0.192 4.192 14 C -0.079 4.079 15 C -0.166 4.166 16 Cl -0.045 7.045 17 C 0.123 3.877 18 N -0.404 5.404 19 H 0.091 0.909 20 H 0.154 0.846 21 H 0.180 0.820 22 H 0.177 0.823 23 H 0.224 0.776 24 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.852 -7.653 1.017 10.322 hybrid contribution -0.573 0.550 -0.002 0.794 sum 6.278 -7.103 1.015 9.534 Atomic orbital electron populations 1.70085 1.09753 1.29682 1.31895 1.27187 0.95490 1.05351 0.91290 0.85085 0.79343 0.75091 0.79437 1.18548 1.19556 1.16861 1.21394 0.96415 0.92291 1.47379 0.88841 1.18552 0.88138 0.87729 0.77991 1.90245 1.16683 1.88511 1.52531 1.21235 0.96103 0.95084 1.09829 1.21549 0.92039 0.99471 0.93751 1.21162 1.01251 0.90695 1.06088 1.21226 0.90602 1.00057 0.96000 1.20640 0.93501 0.85546 1.16946 1.98284 1.78691 1.32156 1.95393 1.17979 0.85513 0.91914 0.92256 1.42801 1.03618 1.18448 1.75561 0.90918 0.84632 0.82007 0.82345 0.77645 0.75711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.19 11.75 21.88 0.26 -44.94 14 2 C 0.03 1.37 5.50 85.39 0.47 1.84 14 3 Si 0.99 38.44 29.56 68.60 2.03 40.47 14 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 14 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 7 C -0.54 -29.59 8.85 23.65 0.21 -29.38 14 8 H 0.09 4.52 6.05 -2.91 -0.02 4.50 14 9 C 0.38 21.28 6.88 25.57 0.18 21.46 14 10 O -0.59 -36.53 12.40 -4.81 -0.06 -36.59 14 11 C -0.22 -10.18 5.90 -19.87 -0.12 -10.30 14 12 C -0.05 -1.88 9.43 22.53 0.21 -1.66 14 13 C -0.17 -5.09 10.02 22.26 0.22 -4.87 14 14 C -0.06 -1.75 9.81 22.35 0.22 -1.53 14 15 C -0.13 -4.70 6.33 22.42 0.14 -4.56 14 16 Cl -0.07 -2.17 27.78 -2.72 -0.08 -2.25 14 17 C 0.23 9.96 6.77 38.83 0.26 10.22 14 18 N -0.86 -36.27 8.29 -50.74 -0.42 -36.70 14 19 H 0.28 14.49 8.29 -92.71 -0.77 13.72 14 20 H 0.14 4.92 6.23 -2.91 -0.02 4.91 14 21 H 0.16 3.42 8.06 -2.91 -0.02 3.40 14 22 H 0.16 3.43 8.06 -2.91 -0.02 3.41 14 23 H 0.39 14.26 7.88 -92.71 -0.73 13.53 14 24 H 0.41 19.44 6.15 -92.70 -0.57 18.87 14 Total: -1.00 -66.50 231.30 3.50 -63.00 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.03 Total: 35.77 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 1.80 Total: -18.78 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -0.16 Total: -81.63 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.06 Total: -36.59 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.25 kcal Total: -66.50 3.50 -63.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663035.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.544 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds