Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 H 1.09005 * 109.47233 * 305.37223 * 3 2 1 5 5 C 1.52998 * 109.47044 * 185.37798 * 3 2 1 6 6 C 1.50695 * 109.47799 * 64.99883 * 5 3 2 7 7 H 1.08011 * 119.99795 * 0.02562 * 6 5 3 8 8 C 1.37871 * 120.00774 * 179.97438 * 6 5 3 9 9 N 1.31520 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00502 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46909 * 60.00156 * 10 8 6 12 12 H 1.48500 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47156 * 300.00445 * 10 8 6 14 14 C 1.53000 * 109.47209 * 65.37530 * 3 2 1 15 15 C 1.54242 * 108.89533 * 188.49841 * 14 3 2 16 16 C 1.50476 * 108.52380 * 159.26080 * 15 14 3 17 17 C 1.54064 * 112.49315 * 94.15320 * 16 15 14 18 18 C 1.54063 * 112.82167 * 318.28123 * 17 16 15 19 19 C 1.50475 * 112.49442 * 318.28855 * 18 17 16 20 20 C 1.45542 * 108.89371 * 65.61751 * 14 3 2 21 21 H 1.09007 * 109.46872 * 53.79835 * 1 2 3 22 22 H 1.08999 * 109.47882 * 173.79736 * 1 2 3 23 23 H 1.09001 * 109.46936 * 293.80321 * 1 2 3 24 24 H 1.09005 * 109.47263 * 239.99730 * 2 1 3 25 25 H 1.08998 * 109.47293 * 120.00277 * 2 1 3 26 26 H 1.09004 * 109.47327 * 185.00241 * 5 3 2 27 27 H 1.09000 * 109.47281 * 304.99637 * 5 3 2 28 28 H 0.96998 * 120.00021 * 179.97438 * 9 8 6 29 29 H 1.08997 * 108.78642 * 307.05839 * 14 3 2 30 30 H 1.08995 * 109.63144 * 278.97508 * 15 14 3 31 31 H 1.09004 * 109.62727 * 39.55724 * 15 14 3 32 32 H 1.09000 * 108.87774 * 333.37667 * 16 15 14 33 33 H 1.08999 * 108.87663 * 214.92923 * 16 15 14 34 34 H 1.09000 * 108.81106 * 197.42371 * 17 16 15 35 35 H 1.09001 * 108.73082 * 79.08824 * 17 16 15 36 36 H 1.09000 * 108.88189 * 197.51000 * 18 17 16 37 37 H 1.09004 * 108.79366 * 79.00825 * 18 17 16 38 38 H 1.09000 * 109.62954 * 334.44301 * 19 18 17 39 39 H 1.08998 * 109.62798 * 213.85719 * 19 18 17 40 40 H 1.08997 * 108.89547 * 303.44133 * 20 14 3 41 41 H 1.08996 * 108.89451 * 61.93740 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6003 1.9833 -0.8380 5 6 3.5640 1.4444 -0.1352 6 6 3.9499 0.8852 -1.4803 7 1 3.1846 0.5611 -2.1701 8 6 5.2797 0.7881 -1.8309 9 7 6.2117 1.1842 -0.9916 10 14 5.7580 0.0942 -3.4980 11 1 5.1642 0.9312 -4.5714 12 1 7.2372 0.0963 -3.6293 13 1 5.2528 -1.2969 -3.6185 14 6 1.6434 2.1236 1.3113 15 6 1.9717 3.6275 1.2122 16 6 1.1492 4.3647 2.2340 17 6 1.9074 4.5788 3.5579 18 6 2.7104 3.3384 3.9939 19 6 1.9502 2.0570 3.7832 20 6 2.3430 1.4744 2.4101 21 1 -0.3633 0.6070 -0.8293 22 1 -0.3635 -1.0216 -0.1110 23 1 -0.3633 0.4148 0.9403 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9354 2.4654 -0.0461 27 1 3.9995 0.8295 0.6524 28 1 7.1473 1.1156 -1.2382 29 1 0.5698 2.0056 1.4575 30 1 3.0315 3.7849 1.4125 31 1 1.7270 3.9906 0.2140 32 1 0.2424 3.7942 2.4351 33 1 0.8692 5.3363 1.8269 34 1 1.1880 4.8242 4.3392 35 1 2.5935 5.4170 3.4368 36 1 2.9576 3.4319 5.0514 37 1 3.6352 3.2986 3.4182 38 1 0.8793 2.2593 3.8022 39 1 2.2055 1.3463 4.5691 40 1 2.1084 0.4100 2.3981 41 1 3.4164 1.5991 2.2678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -51.205135 kcal Electronic energy + Delta-G solvation = -16607.546269 eV Core-core repulsion = 14292.327125 eV Total energy + Delta-G solvation = -2315.219144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.26998 -35.53059 -32.55762 -31.72271 -31.02137 -28.83103 -25.37194 -24.38049 -23.24540 -21.98273 -20.86787 -18.92143 -17.97853 -16.34203 -15.43721 -14.57667 -14.30981 -14.12985 -13.96585 -13.23662 -12.98840 -12.67770 -12.44692 -12.20585 -11.99321 -11.68845 -11.61513 -11.09613 -10.93138 -10.73398 -10.62877 -10.42309 -10.31475 -10.25195 -10.04221 -9.92648 -9.65874 -9.56072 -9.25255 -8.81481 -8.73867 -8.24570 -5.92382 -3.92747 3.36469 3.40996 3.43486 4.51718 4.98512 5.08580 5.15870 5.42866 5.49051 5.57017 5.61600 5.64688 5.73597 5.81461 5.90319 5.92897 6.03534 6.04815 6.13562 6.35812 6.42075 6.46623 6.47297 6.52271 6.55024 6.58197 6.66790 6.67514 6.84043 6.88344 6.96111 6.99263 7.19510 7.27116 7.40331 7.79102 7.97059 8.09822 8.54573 9.14067 9.70020 11.18733 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.007823 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.398468 B = 3578.405222 C = 4040.292694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.080 4.080 4 H 0.053 0.947 5 C 0.028 3.972 6 C -0.514 4.514 7 H 0.053 0.947 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.076 4.076 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.117 4.117 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.016 0.984 27 H 0.018 0.982 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 3.176 7.892 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.071 0.929 5 C -0.009 4.009 6 C -0.552 4.552 7 H 0.071 0.929 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.095 4.095 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.154 4.154 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.375 3.193 7.910 12.675 hybrid contribution 0.400 -0.372 -0.969 1.112 sum -8.975 2.822 6.942 11.692 Atomic orbital electron populations 1.21858 0.97980 1.00099 1.00810 1.21573 0.93241 0.98223 1.02175 1.21370 0.99904 0.93953 0.94581 0.92864 1.19179 0.88274 0.97017 0.96383 1.21285 0.91507 1.40958 1.01472 0.92881 1.24997 0.96853 0.95831 0.96766 1.69953 1.00120 1.48048 1.35512 0.86756 0.77212 0.79626 0.84973 1.20396 1.21424 1.20384 1.20095 0.98742 0.94401 0.96213 1.21369 1.00526 0.95005 0.97874 1.21355 0.98932 0.99787 0.95244 1.21883 0.98673 0.97681 0.96854 1.21345 0.99664 0.94569 1.00085 1.21336 0.99847 0.96385 0.97777 1.20678 1.02131 0.99549 0.93091 0.93416 0.94058 0.93471 0.91280 0.92769 0.96520 0.96361 0.93162 0.92933 0.91344 0.92260 0.92620 0.93151 0.93158 0.92749 0.93214 0.91579 0.92425 0.92800 0.92413 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.52 37.16 0.35 -1.97 16 2 C -0.11 -2.16 5.13 -26.74 -0.14 -2.30 16 3 C -0.08 -1.61 1.50 -90.62 -0.14 -1.74 16 4 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 5 C 0.03 0.71 3.60 -27.89 -0.10 0.61 16 6 C -0.51 -14.37 8.33 -34.45 -0.29 -14.66 16 7 H 0.05 1.45 7.08 -52.48 -0.37 1.08 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.08 -1.29 1.41 -93.49 -0.13 -1.42 16 15 C -0.11 -1.81 4.29 -27.34 -0.12 -1.93 16 16 C -0.12 -1.57 5.31 -27.44 -0.15 -1.71 16 17 C -0.11 -1.43 5.85 -25.62 -0.15 -1.58 16 18 C -0.12 -1.61 5.32 -27.44 -0.15 -1.76 16 19 C -0.12 -1.61 5.61 -27.34 -0.15 -1.76 16 20 C -0.12 -1.96 3.91 -29.60 -0.12 -2.07 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.68 6.72 -51.93 -0.35 0.33 16 24 H 0.07 1.44 6.81 -51.93 -0.35 1.09 16 25 H 0.05 1.01 6.21 -51.93 -0.32 0.69 16 26 H 0.02 0.45 6.97 -51.93 -0.36 0.08 16 27 H 0.02 0.49 6.67 -51.93 -0.35 0.14 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.05 0.84 5.69 -51.93 -0.30 0.54 16 30 H 0.07 1.24 6.42 -51.93 -0.33 0.90 16 31 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16 32 H 0.06 0.73 6.63 -51.93 -0.34 0.39 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.01 6.63 -51.93 -0.34 0.67 16 38 H 0.06 0.76 6.98 -51.93 -0.36 0.40 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.97 6.07 -51.93 -0.32 0.66 16 41 H 0.07 1.43 5.66 -51.93 -0.29 1.13 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -28.60 295.00 -8.51 -37.11 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.31 Total: -1.40 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -1.36 Total: -30.79 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.60 -8.51 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.095 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds