Wall clock time and date at job start Mon Mar 30 2020 02:36:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47447 * 2 1
4 4 H 1.09005 * 109.47233 * 305.37223 * 3 2 1
5 5 C 1.52998 * 109.47044 * 185.37798 * 3 2 1
6 6 C 1.50695 * 109.47799 * 64.99883 * 5 3 2
7 7 H 1.08011 * 119.99795 * 0.02562 * 6 5 3
8 8 C 1.37871 * 120.00774 * 179.97438 * 6 5 3
9 9 N 1.31520 * 119.99831 * 359.97438 * 8 6 5
10 10 Si 1.86802 * 120.00502 * 179.97438 * 8 6 5
11 11 H 1.48503 * 109.46909 * 60.00156 * 10 8 6
12 12 H 1.48500 * 109.47309 * 180.02562 * 10 8 6
13 13 H 1.48495 * 109.47156 * 300.00445 * 10 8 6
14 14 C 1.53000 * 109.47209 * 65.37530 * 3 2 1
15 15 C 1.54242 * 108.89533 * 188.49841 * 14 3 2
16 16 C 1.50476 * 108.52380 * 159.26080 * 15 14 3
17 17 C 1.54064 * 112.49315 * 94.15320 * 16 15 14
18 18 C 1.54063 * 112.82167 * 318.28123 * 17 16 15
19 19 C 1.50475 * 112.49442 * 318.28855 * 18 17 16
20 20 C 1.45542 * 108.89371 * 65.61751 * 14 3 2
21 21 H 1.09007 * 109.46872 * 53.79835 * 1 2 3
22 22 H 1.08999 * 109.47882 * 173.79736 * 1 2 3
23 23 H 1.09001 * 109.46936 * 293.80321 * 1 2 3
24 24 H 1.09005 * 109.47263 * 239.99730 * 2 1 3
25 25 H 1.08998 * 109.47293 * 120.00277 * 2 1 3
26 26 H 1.09004 * 109.47327 * 185.00241 * 5 3 2
27 27 H 1.09000 * 109.47281 * 304.99637 * 5 3 2
28 28 H 0.96998 * 120.00021 * 179.97438 * 9 8 6
29 29 H 1.08997 * 108.78642 * 307.05839 * 14 3 2
30 30 H 1.08995 * 109.63144 * 278.97508 * 15 14 3
31 31 H 1.09004 * 109.62727 * 39.55724 * 15 14 3
32 32 H 1.09000 * 108.87774 * 333.37667 * 16 15 14
33 33 H 1.08999 * 108.87663 * 214.92923 * 16 15 14
34 34 H 1.09000 * 108.81106 * 197.42371 * 17 16 15
35 35 H 1.09001 * 108.73082 * 79.08824 * 17 16 15
36 36 H 1.09000 * 108.88189 * 197.51000 * 18 17 16
37 37 H 1.09004 * 108.79366 * 79.00825 * 18 17 16
38 38 H 1.09000 * 109.62954 * 334.44301 * 19 18 17
39 39 H 1.08998 * 109.62798 * 213.85719 * 19 18 17
40 40 H 1.08997 * 108.89547 * 303.44133 * 20 14 3
41 41 H 1.08996 * 108.89451 * 61.93740 * 20 14 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6003 1.9833 -0.8380
5 6 3.5640 1.4444 -0.1352
6 6 3.9499 0.8852 -1.4803
7 1 3.1846 0.5611 -2.1701
8 6 5.2797 0.7881 -1.8309
9 7 6.2117 1.1842 -0.9916
10 14 5.7580 0.0942 -3.4980
11 1 5.1642 0.9312 -4.5714
12 1 7.2372 0.0963 -3.6293
13 1 5.2528 -1.2969 -3.6185
14 6 1.6434 2.1236 1.3113
15 6 1.9717 3.6275 1.2122
16 6 1.1492 4.3647 2.2340
17 6 1.9074 4.5788 3.5579
18 6 2.7104 3.3384 3.9939
19 6 1.9502 2.0570 3.7832
20 6 2.3430 1.4744 2.4101
21 1 -0.3633 0.6070 -0.8293
22 1 -0.3635 -1.0216 -0.1110
23 1 -0.3633 0.4148 0.9403
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5139 0.8899
26 1 3.9354 2.4654 -0.0461
27 1 3.9995 0.8295 0.6524
28 1 7.1473 1.1156 -1.2382
29 1 0.5698 2.0056 1.4575
30 1 3.0315 3.7849 1.4125
31 1 1.7270 3.9906 0.2140
32 1 0.2424 3.7942 2.4351
33 1 0.8692 5.3363 1.8269
34 1 1.1880 4.8242 4.3392
35 1 2.5935 5.4170 3.4368
36 1 2.9576 3.4319 5.0514
37 1 3.6352 3.2986 3.4182
38 1 0.8793 2.2593 3.8022
39 1 2.2055 1.3463 4.5691
40 1 2.1084 0.4100 2.3981
41 1 3.4164 1.5991 2.2678
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260663660.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:36:10
Heat of formation + Delta-G solvation = -51.205135 kcal
Electronic energy + Delta-G solvation = -16607.546269 eV
Core-core repulsion = 14292.327125 eV
Total energy + Delta-G solvation = -2315.219144 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 224.184 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.26998 -35.53059 -32.55762 -31.72271 -31.02137 -28.83103 -25.37194 -24.38049
-23.24540 -21.98273 -20.86787 -18.92143 -17.97853 -16.34203 -15.43721 -14.57667
-14.30981 -14.12985 -13.96585 -13.23662 -12.98840 -12.67770 -12.44692 -12.20585
-11.99321 -11.68845 -11.61513 -11.09613 -10.93138 -10.73398 -10.62877 -10.42309
-10.31475 -10.25195 -10.04221 -9.92648 -9.65874 -9.56072 -9.25255 -8.81481
-8.73867 -8.24570 -5.92382 -3.92747 3.36469 3.40996 3.43486 4.51718
4.98512 5.08580 5.15870 5.42866 5.49051 5.57017 5.61600 5.64688
5.73597 5.81461 5.90319 5.92897 6.03534 6.04815 6.13562 6.35812
6.42075 6.46623 6.47297 6.52271 6.55024 6.58197 6.66790 6.67514
6.84043 6.88344 6.96111 6.99263 7.19510 7.27116 7.40331 7.79102
7.97059 8.09822 8.54573 9.14067 9.70020 11.18733
Molecular weight = 224.18amu
Principal moments of inertia in cm(-1)
A = 0.028907 B = 0.007823 C = 0.006929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.398468 B = 3578.405222 C = 4040.292694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.115 4.115
3 C -0.080 4.080
4 H 0.053 0.947
5 C 0.028 3.972
6 C -0.514 4.514
7 H 0.053 0.947
8 C 0.056 3.944
9 N -0.897 5.897
10 Si 0.886 3.114
11 H -0.278 1.278
12 H -0.289 1.289
13 H -0.278 1.278
14 C -0.076 4.076
15 C -0.110 4.110
16 C -0.116 4.116
17 C -0.113 4.113
18 C -0.119 4.119
19 C -0.116 4.116
20 C -0.117 4.117
21 H 0.047 0.953
22 H 0.040 0.960
23 H 0.046 0.954
24 H 0.069 0.931
25 H 0.054 0.946
26 H 0.016 0.984
27 H 0.018 0.982
28 H 0.259 0.741
29 H 0.052 0.948
30 H 0.068 0.932
31 H 0.059 0.941
32 H 0.055 0.945
33 H 0.050 0.950
34 H 0.050 0.950
35 H 0.054 0.946
36 H 0.049 0.951
37 H 0.065 0.935
38 H 0.057 0.943
39 H 0.053 0.947
40 H 0.057 0.943
41 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.570 3.176 7.892 12.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.152 4.152
3 C -0.098 4.098
4 H 0.071 0.929
5 C -0.009 4.009
6 C -0.552 4.552
7 H 0.071 0.929
8 C -0.144 4.144
9 N -0.536 5.536
10 Si 0.714 3.286
11 H -0.204 1.204
12 H -0.214 1.214
13 H -0.204 1.204
14 C -0.095 4.095
15 C -0.148 4.148
16 C -0.153 4.153
17 C -0.151 4.151
18 C -0.157 4.157
19 C -0.153 4.153
20 C -0.154 4.154
21 H 0.066 0.934
22 H 0.059 0.941
23 H 0.065 0.935
24 H 0.087 0.913
25 H 0.072 0.928
26 H 0.035 0.965
27 H 0.036 0.964
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.074 0.926
33 H 0.068 0.932
34 H 0.068 0.932
35 H 0.073 0.927
36 H 0.068 0.932
37 H 0.084 0.916
38 H 0.076 0.924
39 H 0.072 0.928
40 H 0.076 0.924
41 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -9.375 3.193 7.910 12.675
hybrid contribution 0.400 -0.372 -0.969 1.112
sum -8.975 2.822 6.942 11.692
Atomic orbital electron populations
1.21858 0.97980 1.00099 1.00810 1.21573 0.93241 0.98223 1.02175
1.21370 0.99904 0.93953 0.94581 0.92864 1.19179 0.88274 0.97017
0.96383 1.21285 0.91507 1.40958 1.01472 0.92881 1.24997 0.96853
0.95831 0.96766 1.69953 1.00120 1.48048 1.35512 0.86756 0.77212
0.79626 0.84973 1.20396 1.21424 1.20384 1.20095 0.98742 0.94401
0.96213 1.21369 1.00526 0.95005 0.97874 1.21355 0.98932 0.99787
0.95244 1.21883 0.98673 0.97681 0.96854 1.21345 0.99664 0.94569
1.00085 1.21336 0.99847 0.96385 0.97777 1.20678 1.02131 0.99549
0.93091 0.93416 0.94058 0.93471 0.91280 0.92769 0.96520 0.96361
0.93162 0.92933 0.91344 0.92260 0.92620 0.93151 0.93158 0.92749
0.93214 0.91579 0.92425 0.92800 0.92413 0.90794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 9.52 37.16 0.35 -1.97 16
2 C -0.11 -2.16 5.13 -26.74 -0.14 -2.30 16
3 C -0.08 -1.61 1.50 -90.62 -0.14 -1.74 16
4 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16
5 C 0.03 0.71 3.60 -27.89 -0.10 0.61 16
6 C -0.51 -14.37 8.33 -34.45 -0.29 -14.66 16
7 H 0.05 1.45 7.08 -52.48 -0.37 1.08 16
8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16
10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16
11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
14 C -0.08 -1.29 1.41 -93.49 -0.13 -1.42 16
15 C -0.11 -1.81 4.29 -27.34 -0.12 -1.93 16
16 C -0.12 -1.57 5.31 -27.44 -0.15 -1.71 16
17 C -0.11 -1.43 5.85 -25.62 -0.15 -1.58 16
18 C -0.12 -1.61 5.32 -27.44 -0.15 -1.76 16
19 C -0.12 -1.61 5.61 -27.34 -0.15 -1.76 16
20 C -0.12 -1.96 3.91 -29.60 -0.12 -2.07 16
21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
23 H 0.05 0.68 6.72 -51.93 -0.35 0.33 16
24 H 0.07 1.44 6.81 -51.93 -0.35 1.09 16
25 H 0.05 1.01 6.21 -51.93 -0.32 0.69 16
26 H 0.02 0.45 6.97 -51.93 -0.36 0.08 16
27 H 0.02 0.49 6.67 -51.93 -0.35 0.14 16
28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
29 H 0.05 0.84 5.69 -51.93 -0.30 0.54 16
30 H 0.07 1.24 6.42 -51.93 -0.33 0.90 16
31 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16
32 H 0.06 0.73 6.63 -51.93 -0.34 0.39 16
33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.07 1.01 6.63 -51.93 -0.34 0.67 16
38 H 0.06 0.76 6.98 -51.93 -0.36 0.40 16
39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.06 0.97 6.07 -51.93 -0.32 0.66 16
41 H 0.07 1.43 5.66 -51.93 -0.29 1.13 16
LS Contribution 295.00 15.07 4.45 4.45
Total: -1.00 -28.60 295.00 -8.51 -37.11
By element:
Atomic # 1 Polarization: 5.91 SS G_CDS: -7.31 Total: -1.40 kcal
Atomic # 6 Polarization: -29.43 SS G_CDS: -1.36 Total: -30.79 kcal
Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -28.60 -8.51 -37.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260663660.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.095 kcal
(2) G-P(sol) polarization free energy of solvation -28.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds