Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 H 1.09005 * 109.47233 * 305.37223 * 3 2 1 5 5 C 1.52998 * 109.47044 * 185.37798 * 3 2 1 6 6 C 1.50695 * 109.47799 * 64.99883 * 5 3 2 7 7 H 1.08011 * 119.99795 * 0.02562 * 6 5 3 8 8 C 1.37871 * 120.00774 * 179.97438 * 6 5 3 9 9 N 1.31520 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00502 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46909 * 60.00156 * 10 8 6 12 12 H 1.48500 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47156 * 300.00445 * 10 8 6 14 14 C 1.53000 * 109.47209 * 65.37530 * 3 2 1 15 15 C 1.54242 * 108.89533 * 188.49841 * 14 3 2 16 16 C 1.50476 * 108.52380 * 159.26080 * 15 14 3 17 17 C 1.54064 * 112.49315 * 94.15320 * 16 15 14 18 18 C 1.54063 * 112.82167 * 318.28123 * 17 16 15 19 19 C 1.50475 * 112.49442 * 318.28855 * 18 17 16 20 20 C 1.45542 * 108.89371 * 65.61751 * 14 3 2 21 21 H 1.09007 * 109.46872 * 53.79835 * 1 2 3 22 22 H 1.08999 * 109.47882 * 173.79736 * 1 2 3 23 23 H 1.09001 * 109.46936 * 293.80321 * 1 2 3 24 24 H 1.09005 * 109.47263 * 239.99730 * 2 1 3 25 25 H 1.08998 * 109.47293 * 120.00277 * 2 1 3 26 26 H 1.09004 * 109.47327 * 185.00241 * 5 3 2 27 27 H 1.09000 * 109.47281 * 304.99637 * 5 3 2 28 28 H 0.96998 * 120.00021 * 179.97438 * 9 8 6 29 29 H 1.08997 * 108.78642 * 307.05839 * 14 3 2 30 30 H 1.08995 * 109.63144 * 278.97508 * 15 14 3 31 31 H 1.09004 * 109.62727 * 39.55724 * 15 14 3 32 32 H 1.09000 * 108.87774 * 333.37667 * 16 15 14 33 33 H 1.08999 * 108.87663 * 214.92923 * 16 15 14 34 34 H 1.09000 * 108.81106 * 197.42371 * 17 16 15 35 35 H 1.09001 * 108.73082 * 79.08824 * 17 16 15 36 36 H 1.09000 * 108.88189 * 197.51000 * 18 17 16 37 37 H 1.09004 * 108.79366 * 79.00825 * 18 17 16 38 38 H 1.09000 * 109.62954 * 334.44301 * 19 18 17 39 39 H 1.08998 * 109.62798 * 213.85719 * 19 18 17 40 40 H 1.08997 * 108.89547 * 303.44133 * 20 14 3 41 41 H 1.08996 * 108.89451 * 61.93740 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6003 1.9833 -0.8380 5 6 3.5640 1.4444 -0.1352 6 6 3.9499 0.8852 -1.4803 7 1 3.1846 0.5611 -2.1701 8 6 5.2797 0.7881 -1.8309 9 7 6.2117 1.1842 -0.9916 10 14 5.7580 0.0942 -3.4980 11 1 5.1642 0.9312 -4.5714 12 1 7.2372 0.0963 -3.6293 13 1 5.2528 -1.2969 -3.6185 14 6 1.6434 2.1236 1.3113 15 6 1.9717 3.6275 1.2122 16 6 1.1492 4.3647 2.2340 17 6 1.9074 4.5788 3.5579 18 6 2.7104 3.3384 3.9939 19 6 1.9502 2.0570 3.7832 20 6 2.3430 1.4744 2.4101 21 1 -0.3633 0.6070 -0.8293 22 1 -0.3635 -1.0216 -0.1110 23 1 -0.3633 0.4148 0.9403 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9354 2.4654 -0.0461 27 1 3.9995 0.8295 0.6524 28 1 7.1473 1.1156 -1.2382 29 1 0.5698 2.0056 1.4575 30 1 3.0315 3.7849 1.4125 31 1 1.7270 3.9906 0.2140 32 1 0.2424 3.7942 2.4351 33 1 0.8692 5.3363 1.8269 34 1 1.1880 4.8242 4.3392 35 1 2.5935 5.4170 3.4368 36 1 2.9576 3.4319 5.0514 37 1 3.6352 3.2986 3.4182 38 1 0.8793 2.2593 3.8022 39 1 2.2055 1.3463 4.5691 40 1 2.1084 0.4100 2.3981 41 1 3.4164 1.5991 2.2678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -64.955209 kcal Electronic energy + Delta-G solvation = -16608.142517 eV Core-core repulsion = 14292.327125 eV Total energy + Delta-G solvation = -2315.815392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65561 -36.97073 -34.66924 -32.92241 -32.32068 -30.69137 -27.07849 -25.61865 -24.71233 -23.77530 -22.24873 -20.04488 -19.55520 -18.47787 -16.76660 -16.49395 -15.63448 -15.57825 -15.26378 -14.61082 -14.45718 -14.19491 -14.08046 -13.73314 -13.54035 -13.02172 -12.88858 -12.83962 -12.63016 -12.46921 -12.21188 -12.09500 -11.72850 -11.50293 -11.42983 -11.29134 -11.10175 -11.07218 -10.81351 -10.59112 -10.50940 -10.39718 -8.15018 -6.23409 1.37662 1.40147 1.47775 2.41987 3.17537 3.77442 3.88259 3.99816 4.24156 4.31283 4.34323 4.41721 4.47075 4.55183 4.60856 4.65634 4.73442 4.93365 4.98426 5.01663 5.05459 5.17908 5.19578 5.24058 5.29645 5.35863 5.39263 5.42359 5.46056 5.47549 5.50249 5.57369 5.62791 5.67354 5.69507 5.85400 5.94257 6.01107 6.36957 6.94166 7.43965 8.96103 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.007823 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.398468 B = 3578.405222 C = 4040.292694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.044 0.956 5 C 0.041 3.959 6 C -0.531 4.531 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.955 3.045 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.268 1.268 14 C -0.068 4.068 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.107 4.107 20 C -0.114 4.114 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.051 0.949 26 H -0.014 1.014 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 3.123 8.377 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.093 4.093 4 H 0.063 0.937 5 C 0.004 3.996 6 C -0.569 4.569 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.086 4.086 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.151 4.151 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.004 0.996 27 H 0.010 0.990 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.643 3.140 8.393 14.693 hybrid contribution 1.154 -0.357 -1.118 1.646 sum -10.489 2.783 7.276 13.065 Atomic orbital electron populations 1.21763 0.94549 1.01548 1.01923 1.21496 0.96204 0.96537 1.00759 1.21261 0.96041 0.95570 0.96388 0.93737 1.18989 0.91920 0.94234 0.94461 1.21722 0.91882 1.40751 1.02587 0.92653 1.25903 0.96918 0.96215 1.00811 1.70100 1.00431 1.49291 1.37633 0.85653 0.76947 0.79234 0.80144 1.19423 1.20991 1.19347 1.20050 1.00030 0.94294 0.94214 1.21320 0.99459 0.95226 0.98613 1.21308 0.98737 1.00163 0.94692 1.21882 0.99021 0.96989 0.97029 1.21346 0.98569 0.95139 1.00756 1.21288 1.00932 0.96486 0.95774 1.20611 0.99647 0.99705 0.95168 0.93101 0.92339 0.91662 0.93976 0.92988 0.99604 0.98981 0.93119 0.90312 0.94248 0.93284 0.91129 0.91850 0.90571 0.92913 0.91346 0.94674 0.90427 0.91644 0.92644 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.52 71.98 0.69 -3.31 16 2 C -0.11 -4.22 5.13 30.59 0.16 -4.07 16 3 C -0.07 -3.05 1.50 -10.80 -0.02 -3.07 16 4 H 0.04 1.89 7.94 -2.38 -0.02 1.87 16 5 C 0.04 2.17 3.60 29.85 0.11 2.28 16 6 C -0.53 -30.75 8.33 25.60 0.21 -30.53 16 7 H 0.06 3.10 7.08 -2.90 -0.02 3.08 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 10 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 C -0.07 -2.27 1.41 -12.65 -0.02 -2.29 16 15 C -0.11 -3.59 4.29 30.20 0.13 -3.46 16 16 C -0.11 -2.77 5.31 30.14 0.16 -2.61 16 17 C -0.11 -2.57 5.85 31.31 0.18 -2.38 16 18 C -0.12 -3.12 5.32 30.14 0.16 -2.96 16 19 C -0.11 -2.77 5.61 30.20 0.17 -2.60 16 20 C -0.11 -3.82 3.91 28.74 0.11 -3.71 16 21 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.63 6.72 -2.39 -0.02 1.61 16 24 H 0.04 1.78 6.81 -2.38 -0.02 1.76 16 25 H 0.05 1.95 6.21 -2.39 -0.01 1.93 16 26 H -0.01 -0.84 6.97 -2.39 -0.02 -0.86 16 27 H -0.01 -0.47 6.67 -2.39 -0.02 -0.49 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.08 2.27 5.69 -2.39 -0.01 2.26 16 30 H 0.04 1.51 6.42 -2.39 -0.02 1.49 16 31 H 0.05 1.68 7.84 -2.39 -0.02 1.67 16 32 H 0.07 1.57 6.63 -2.39 -0.02 1.55 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 1.12 6.63 -2.38 -0.02 1.10 16 38 H 0.08 1.73 6.98 -2.39 -0.02 1.72 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.85 6.07 -2.39 -0.01 1.84 16 41 H 0.03 1.42 5.66 -2.39 -0.01 1.41 16 Total: -1.00 -63.91 295.00 5.79 -58.12 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.97 Total: 10.56 kcal Atomic # 6 Polarization: -60.84 SS G_CDS: 2.51 Total: -58.33 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.28 Total: -57.89 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -63.91 5.79 -58.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.834 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds