Wall clock time and date at job start Mon Mar 30 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48508 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47036 * 299.99776 * 3 2 1 6 6 H 1.48496 * 109.47067 * 60.00384 * 3 2 1 7 7 C 1.40328 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.41763 * 119.99917 * 359.97438 * 7 2 1 10 10 O 1.21851 * 120.00164 * 0.02562 * 9 7 2 11 11 C 1.47411 * 120.00492 * 180.02562 * 9 7 2 12 12 C 1.39856 * 120.21285 * 5.78914 * 11 9 7 13 13 C 1.37751 * 119.90962 * 179.97438 * 12 11 9 14 14 Cl 1.73598 * 119.82150 * 179.97438 * 13 12 11 15 15 C 1.38915 * 120.35742 * 359.72058 * 13 12 11 16 16 C 1.37929 * 120.44758 * 0.55907 * 15 13 12 17 17 C 1.38975 * 120.07510 * 359.44778 * 16 15 13 18 18 N 1.38742 * 120.17463 * 180.25569 * 17 16 15 19 19 H 0.96997 * 120.00352 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.05148 * 359.95275 * 12 11 9 21 21 H 1.08007 * 119.77559 * 180.27755 * 15 13 12 22 22 H 1.07996 * 119.95974 * 179.71988 * 16 15 13 23 23 H 0.96995 * 120.00086 * 354.57731 * 18 17 16 24 24 H 0.97006 * 119.99689 * 174.58882 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3464 -0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3964 1.2125 7 6 2.0071 -1.2152 -0.0005 8 1 3.0870 -1.2152 -0.0001 9 6 1.2983 -2.4430 -0.0005 10 8 0.0798 -2.4431 -0.0005 11 6 2.0353 -3.7196 -0.0005 12 6 3.4285 -3.7280 0.1214 13 6 4.1109 -4.9246 0.1212 14 17 5.8403 -4.9322 0.2719 15 6 3.4221 -6.1255 0.0062 16 6 2.0487 -6.1342 -0.1206 17 6 1.3419 -4.9376 -0.1226 18 7 -0.0401 -4.9443 -0.2447 19 1 -0.4850 0.8400 0.0004 20 1 3.9688 -2.7976 0.2152 21 1 3.9662 -7.0585 0.0116 22 1 1.5217 -7.0722 -0.2139 23 1 -0.5086 -5.7778 -0.4077 24 1 -0.5378 -4.1152 -0.1672 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719189.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:17 Heat of formation + Delta-G solvation = -29.619184 kcal Electronic energy + Delta-G solvation = -12836.901840 eV Core-core repulsion = 10354.569609 eV Total energy + Delta-G solvation = -2482.332231 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.94870 -36.49032 -35.70558 -33.65241 -32.63860 -30.60578 -27.87813 -26.65118 -22.99859 -21.52767 -19.79427 -16.87039 -16.51730 -15.95220 -15.62900 -14.78783 -13.79296 -13.39584 -13.22983 -13.20108 -12.64931 -11.99810 -11.72504 -11.53195 -11.38475 -10.99680 -10.94455 -10.42614 -10.34571 -10.23911 -9.57905 -9.07983 -8.23395 -7.58447 -6.76449 -6.41095 -5.00144 1.78588 2.11370 2.81972 2.99671 3.09957 3.14910 3.95364 3.96815 4.57763 4.73631 5.41039 5.48030 5.68938 5.90378 6.06434 6.34606 6.59648 6.77749 6.86344 7.03007 7.16596 7.41782 7.93852 8.24065 8.52439 8.69904 8.91961 10.18970 10.40769 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.009782 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.499449 B = 2861.633110 C = 3893.078721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.077 0.923 9 C 0.399 3.601 10 O -0.550 6.550 11 C -0.182 4.182 12 C -0.032 4.032 13 C -0.114 4.114 14 Cl -0.103 7.103 15 C -0.064 4.064 16 C -0.218 4.218 17 C 0.255 3.745 18 N -0.856 5.856 19 H 0.274 0.726 20 H 0.136 0.864 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.380 0.620 24 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -6.681 -0.172 8.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.095 0.905 9 C 0.299 3.701 10 O -0.441 6.441 11 C -0.188 4.188 12 C -0.052 4.052 13 C -0.143 4.143 14 Cl -0.075 7.075 15 C -0.083 4.083 16 C -0.242 4.242 17 C 0.143 3.857 18 N -0.406 5.406 19 H 0.085 0.915 20 H 0.154 0.846 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.205 0.795 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.324 -6.522 -0.149 7.826 hybrid contribution 0.457 0.573 -0.035 0.734 sum 4.781 -5.948 -0.184 7.634 Atomic orbital electron populations 1.69945 1.07553 1.28172 1.30407 1.26014 0.94678 1.01133 0.92553 0.86305 0.81011 0.81079 0.78566 1.18177 1.19796 1.19781 1.20933 0.95152 0.91436 1.46611 0.90500 1.17883 0.87959 0.85759 0.78533 1.90101 1.15263 1.86790 1.51952 1.21207 0.93364 0.95985 1.08272 1.21165 0.93280 0.96403 0.94328 1.20480 0.82918 0.95241 1.15644 1.98287 1.13101 1.99005 1.97111 1.20615 0.93459 0.96032 0.98227 1.20424 0.93720 0.96241 1.13797 1.18217 0.85022 0.92705 0.89715 1.43618 1.04129 1.14383 1.78459 0.91464 0.84596 0.86244 0.86303 0.79453 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.21 11.73 55.57 0.65 -19.56 14 2 C 0.08 2.08 5.50 -17.32 -0.10 1.99 14 3 Si 0.91 18.88 29.56 -169.99 -5.03 13.85 14 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 14 7 C -0.51 -13.66 8.85 -37.45 -0.33 -13.99 14 8 H 0.08 1.90 6.06 -52.49 -0.32 1.58 14 9 C 0.40 10.86 6.89 -34.50 -0.24 10.62 14 10 O -0.55 -16.03 12.20 5.05 0.06 -15.97 14 11 C -0.18 -4.23 5.90 -104.63 -0.62 -4.85 14 12 C -0.03 -0.67 9.19 -39.15 -0.36 -1.03 14 13 C -0.11 -2.09 6.31 -39.51 -0.25 -2.34 14 14 Cl -0.10 -1.66 28.94 -51.86 -1.50 -3.16 14 15 C -0.06 -1.06 9.81 -39.44 -0.39 -1.45 14 16 C -0.22 -3.75 9.88 -39.42 -0.39 -4.14 14 17 C 0.25 5.24 6.77 -83.54 -0.57 4.67 14 18 N -0.86 -16.53 8.93 32.59 0.29 -16.24 14 19 H 0.27 6.78 8.29 -40.82 -0.34 6.45 14 20 H 0.14 2.79 6.24 -52.49 -0.33 2.46 14 21 H 0.12 1.65 8.06 -52.48 -0.42 1.23 14 22 H 0.12 1.67 8.06 -52.49 -0.42 1.25 14 23 H 0.38 5.74 8.84 -40.82 -0.36 5.38 14 24 H 0.42 9.35 5.34 -40.92 -0.22 9.13 14 LS Contribution 232.68 15.07 3.51 3.51 Total: -1.00 -29.31 232.68 -6.45 -35.76 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -1.20 Total: 12.31 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.23 Total: -10.51 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.94 Total: -35.80 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.06 Total: -15.97 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.50 Total: -3.16 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.31 -6.45 -35.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719189.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.140 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds