Wall clock time and date at job start Mon Mar 30 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48508 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47036 * 299.99776 * 3 2 1 6 6 H 1.48496 * 109.47067 * 60.00384 * 3 2 1 7 7 C 1.40328 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.41763 * 119.99917 * 359.97438 * 7 2 1 10 10 O 1.21851 * 120.00164 * 0.02562 * 9 7 2 11 11 C 1.47411 * 120.00492 * 180.02562 * 9 7 2 12 12 C 1.39856 * 120.21285 * 5.78914 * 11 9 7 13 13 C 1.37751 * 119.90962 * 179.97438 * 12 11 9 14 14 Cl 1.73598 * 119.82150 * 179.97438 * 13 12 11 15 15 C 1.38915 * 120.35742 * 359.72058 * 13 12 11 16 16 C 1.37929 * 120.44758 * 0.55907 * 15 13 12 17 17 C 1.38975 * 120.07510 * 359.44778 * 16 15 13 18 18 N 1.38742 * 120.17463 * 180.25569 * 17 16 15 19 19 H 0.96997 * 120.00352 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.05148 * 359.95275 * 12 11 9 21 21 H 1.08007 * 119.77559 * 180.27755 * 15 13 12 22 22 H 1.07996 * 119.95974 * 179.71988 * 16 15 13 23 23 H 0.96995 * 120.00086 * 354.57731 * 18 17 16 24 24 H 0.97006 * 119.99689 * 174.58882 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3464 -0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3964 1.2125 7 6 2.0071 -1.2152 -0.0005 8 1 3.0870 -1.2152 -0.0001 9 6 1.2983 -2.4430 -0.0005 10 8 0.0798 -2.4431 -0.0005 11 6 2.0353 -3.7196 -0.0005 12 6 3.4285 -3.7280 0.1214 13 6 4.1109 -4.9246 0.1212 14 17 5.8403 -4.9322 0.2719 15 6 3.4221 -6.1255 0.0062 16 6 2.0487 -6.1342 -0.1206 17 6 1.3419 -4.9376 -0.1226 18 7 -0.0401 -4.9443 -0.2447 19 1 -0.4850 0.8400 0.0004 20 1 3.9688 -2.7976 0.2152 21 1 3.9662 -7.0585 0.0116 22 1 1.5217 -7.0722 -0.2139 23 1 -0.5086 -5.7778 -0.4077 24 1 -0.5378 -4.1152 -0.1672 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719189.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:17 Heat of formation + Delta-G solvation = -48.635907 kcal Electronic energy + Delta-G solvation = -12837.726467 eV Core-core repulsion = 10354.569609 eV Total energy + Delta-G solvation = -2483.156858 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54514 -38.26684 -37.18819 -35.25234 -34.54681 -32.20998 -29.45796 -28.53006 -24.63788 -23.09963 -21.54218 -18.63383 -18.24152 -17.45625 -17.32161 -16.45157 -15.38917 -15.07840 -14.85572 -14.73392 -14.37634 -13.75259 -13.37042 -13.13737 -12.92034 -12.66509 -12.53103 -12.17499 -11.98791 -11.71910 -11.01451 -11.00455 -9.78374 -9.57207 -8.35328 -8.29923 -7.05643 0.24150 0.61593 1.35339 1.38294 1.41510 1.55217 2.20083 2.20509 2.87032 3.25687 3.71983 4.01731 4.06882 4.39846 4.58463 4.81798 5.11239 5.19744 5.30918 5.36628 5.51168 5.90223 5.95362 6.61843 6.70184 6.79212 7.24545 8.22628 8.46548 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.009782 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.499449 B = 2861.633110 C = 3893.078721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.087 0.913 9 C 0.378 3.622 10 O -0.585 6.585 11 C -0.227 4.227 12 C -0.037 4.037 13 C -0.119 4.119 14 Cl -0.081 7.081 15 C -0.047 4.047 16 C -0.204 4.204 17 C 0.240 3.760 18 N -0.857 5.857 19 H 0.282 0.718 20 H 0.127 0.873 21 H 0.160 0.840 22 H 0.159 0.841 23 H 0.399 0.601 24 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -7.921 -0.222 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.105 0.895 9 C 0.280 3.720 10 O -0.479 6.479 11 C -0.234 4.234 12 C -0.057 4.057 13 C -0.147 4.147 14 Cl -0.053 7.053 15 C -0.067 4.067 16 C -0.227 4.227 17 C 0.129 3.871 18 N -0.405 5.405 19 H 0.093 0.907 20 H 0.145 0.855 21 H 0.178 0.822 22 H 0.176 0.824 23 H 0.228 0.772 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.096 -7.810 -0.203 9.910 hybrid contribution -0.042 0.808 -0.016 0.809 sum 6.055 -7.002 -0.219 9.259 Atomic orbital electron populations 1.70053 1.09558 1.29760 1.31538 1.27126 0.95526 1.05161 0.91284 0.85093 0.79650 0.75534 0.78976 1.17169 1.18892 1.18865 1.21382 0.95944 0.92447 1.47579 0.89461 1.18468 0.87971 0.87887 0.77651 1.90065 1.16550 1.87983 1.53297 1.20896 0.94438 0.95431 1.12607 1.21080 0.92534 0.97358 0.94722 1.20566 0.84236 0.94938 1.15000 1.98295 1.11016 1.98960 1.96990 1.21092 0.93377 0.96880 0.95329 1.20814 0.94038 0.96283 1.11593 1.18466 0.85472 0.93174 0.90033 1.43493 1.04040 1.14701 1.78292 0.90734 0.85483 0.82227 0.82374 0.77185 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.63 11.73 21.88 0.26 -44.37 14 2 C 0.03 1.53 5.50 85.39 0.47 2.00 14 3 Si 0.99 39.15 29.56 68.60 2.03 41.18 14 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 14 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 14 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 14 7 C -0.54 -30.09 8.85 23.65 0.21 -29.88 14 8 H 0.09 4.45 6.06 -2.91 -0.02 4.43 14 9 C 0.38 21.50 6.89 25.56 0.18 21.68 14 10 O -0.58 -35.86 12.20 -4.83 -0.06 -35.92 14 11 C -0.23 -10.76 5.90 -19.87 -0.12 -10.88 14 12 C -0.04 -1.55 9.19 22.55 0.21 -1.34 14 13 C -0.12 -4.07 6.31 22.32 0.14 -3.93 14 14 Cl -0.08 -2.38 28.94 -2.72 -0.08 -2.46 14 15 C -0.05 -1.39 9.81 22.36 0.22 -1.17 14 16 C -0.20 -6.34 9.88 22.37 0.22 -6.12 14 17 C 0.24 9.71 6.77 38.82 0.26 9.98 14 18 N -0.86 -33.10 8.93 -50.80 -0.45 -33.55 14 19 H 0.28 14.41 8.29 -92.71 -0.77 13.64 14 20 H 0.13 5.32 6.24 -2.91 -0.02 5.30 14 21 H 0.16 3.46 8.06 -2.91 -0.02 3.44 14 22 H 0.16 3.65 8.06 -2.91 -0.02 3.63 14 23 H 0.40 11.64 8.84 -92.71 -0.82 10.82 14 24 H 0.41 18.80 5.34 -94.29 -0.50 18.29 14 Total: -1.00 -65.91 232.68 3.43 -62.48 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.05 Total: 32.31 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 1.79 Total: -19.67 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -0.20 Total: -77.92 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.06 Total: -35.92 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Total: -65.91 3.43 -62.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719189.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.847 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds