Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86807 * 119.99913 * 2 1 4 4 H 1.48498 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47193 * 299.99844 * 3 2 1 6 6 H 1.48500 * 109.47079 * 60.00156 * 3 2 1 7 7 C 1.39728 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.41467 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.47598 * 128.73977 * 0.02562 * 9 7 2 11 11 N 1.29854 * 105.36870 * 180.02562 * 10 9 7 12 12 O 1.20561 * 112.93740 * 0.02562 * 11 10 9 13 13 C 1.33768 * 113.30505 * 359.97438 * 12 11 10 14 14 C 1.50694 * 127.06421 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.75967 * 167.02056 * 14 13 12 16 16 C 1.55142 * 110.85555 * 290.74053 * 14 13 12 17 17 C 1.53859 * 106.89583 * 160.29353 * 16 14 13 18 18 C 1.54271 * 108.92973 * 312.74450 * 17 16 14 19 19 S 1.83093 * 104.64951 * 27.95318 * 18 17 16 20 20 H 0.97001 * 120.00056 * 0.02562 * 1 2 3 21 21 H 1.08003 * 127.32053 * 0.27076 * 10 9 7 22 22 H 1.08997 * 109.97634 * 279.65505 * 16 14 13 23 23 H 1.08999 * 109.97664 * 40.93761 * 16 14 13 24 24 H 1.09001 * 109.60828 * 192.82525 * 17 16 14 25 25 H 1.09008 * 109.46670 * 72.58084 * 17 16 14 26 26 H 1.09002 * 110.40008 * 269.16373 * 18 17 16 27 27 H 1.09005 * 110.50335 * 146.79429 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3965 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0888 -1.2100 0.0001 9 6 1.3014 -2.4352 0.0005 10 6 -0.1574 -2.6595 -0.0005 11 7 -0.3073 -3.9494 0.0005 12 8 0.7413 -4.5443 0.0024 13 6 1.8078 -3.7368 0.0025 14 6 3.2578 -4.1473 0.0051 15 1 3.9003 -3.2973 -0.2244 16 6 3.6476 -4.7894 1.3626 17 6 4.9281 -5.6069 1.1192 18 6 4.7409 -6.4643 -0.1496 19 16 3.5493 -5.5233 -1.1727 20 1 -0.4850 0.8401 -0.0004 21 1 -0.9351 -1.9101 -0.0055 22 1 3.8374 -4.0112 2.1018 23 1 2.8477 -5.4444 1.7080 24 1 5.1160 -6.2557 1.9747 25 1 5.7710 -4.9295 0.9818 26 1 4.3316 -7.4410 0.1088 27 1 5.6881 -6.5776 -0.6770 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260786310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = 33.740703 kcal Electronic energy + Delta-G solvation = -13282.356839 eV Core-core repulsion = 10940.648899 eV Total energy + Delta-G solvation = -2341.707940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.64425 -35.80944 -34.23962 -31.40646 -31.16381 -28.12691 -26.02223 -24.22143 -21.44385 -20.70100 -19.30363 -17.42396 -16.31493 -15.72708 -15.52066 -14.97025 -14.40087 -13.77833 -13.53065 -13.06789 -12.57022 -12.27753 -11.51040 -11.44094 -11.35007 -11.20863 -10.96078 -10.77692 -10.46043 -10.16753 -9.78055 -9.49782 -9.25092 -8.39157 -7.82656 -7.11961 -6.90793 -4.52276 2.18941 2.76985 2.95397 3.00625 3.05773 3.38517 3.82618 3.93194 4.76975 4.93448 5.02727 5.15321 5.30369 5.52966 5.66447 5.83175 5.93356 6.02235 6.26123 6.26920 6.46795 6.67815 6.81178 7.08844 7.30592 7.72526 8.16142 8.53796 8.68543 10.09744 10.16670 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.009121 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.828007 B = 3069.100192 C = 3610.412678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.071 3.929 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.423 4.423 8 H 0.083 0.917 9 C 0.036 3.964 10 C -0.042 4.042 11 N -0.393 5.393 12 O 0.080 5.920 13 C -0.249 4.249 14 C 0.110 3.890 15 H 0.107 0.893 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.077 4.077 19 S -0.315 6.315 20 H 0.283 0.717 21 H 0.195 0.805 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -3.517 2.416 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.029 3.971 10 C -0.223 4.223 11 N -0.096 5.096 12 O 0.009 5.991 13 C -0.312 4.312 14 C -0.018 4.018 15 H 0.125 0.875 16 C -0.165 4.165 17 C -0.166 4.166 18 C -0.225 4.225 19 S -0.086 6.086 20 H 0.093 0.907 21 H 0.211 0.789 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.362 -4.416 1.299 7.852 hybrid contribution 1.223 1.777 1.038 2.394 sum 7.585 -2.638 2.337 8.364 Atomic orbital electron populations 1.69640 1.07597 1.29368 1.37071 1.25912 0.94958 1.01628 0.92055 0.85995 0.80491 0.80097 0.78628 1.18351 1.19733 1.19761 1.18839 0.94238 0.88428 1.43881 0.89901 1.19853 0.90972 0.91814 0.94511 1.26648 0.97800 0.91058 1.06774 1.73084 1.06836 1.10682 1.19001 1.84121 1.09252 1.34448 1.71307 1.22556 0.88125 0.89230 1.31287 1.21530 0.91963 0.95844 0.92462 0.87478 1.22771 0.96826 0.99424 0.97524 1.22287 0.99060 0.98358 0.96882 1.23882 1.00351 1.00799 0.97512 1.87843 1.58264 1.30640 1.31880 0.90656 0.78856 0.89814 0.90391 0.90581 0.91035 0.89662 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.13 10.66 55.54 0.59 -19.54 15 2 C 0.07 1.72 5.49 -17.35 -0.10 1.62 15 3 Si 0.92 18.03 29.56 -169.99 -5.02 13.01 15 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.42 -10.79 9.25 -37.80 -0.35 -11.14 15 8 H 0.08 1.99 7.33 -52.48 -0.38 1.61 15 9 C 0.04 0.95 6.24 -104.32 -0.65 0.30 15 10 C -0.04 -1.13 11.25 -14.57 -0.16 -1.30 15 11 N -0.39 -10.44 11.96 32.03 0.38 -10.06 15 12 O 0.08 2.06 11.03 17.98 0.20 2.26 15 13 C -0.25 -6.10 6.37 -33.78 -0.22 -6.31 15 14 C 0.11 2.21 3.66 -26.75 -0.10 2.11 15 15 H 0.11 2.13 7.50 -51.93 -0.39 1.74 15 16 C -0.13 -2.06 5.88 -25.15 -0.15 -2.20 15 17 C -0.13 -1.64 6.39 -25.62 -0.16 -1.80 15 18 C -0.08 -1.06 7.34 37.82 0.28 -0.78 15 19 S -0.32 -6.00 22.68 -107.50 -2.44 -8.44 15 20 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 21 H 0.19 5.17 6.30 -52.48 -0.33 4.84 15 22 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 23 H 0.08 1.35 8.07 -51.93 -0.42 0.93 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 0.84 8.14 -51.92 -0.42 0.42 15 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 LS Contribution 247.26 15.07 3.73 3.73 Total: -1.00 -27.79 247.26 -6.94 -34.73 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -2.77 Total: 3.83 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.61 Total: -19.51 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.97 Total: -29.60 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.20 Total: 2.26 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.01 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -2.44 Total: -8.44 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.79 -6.94 -34.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260786310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.469 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds