Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86807 * 119.99913 * 2 1 4 4 H 1.48498 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47193 * 299.99844 * 3 2 1 6 6 H 1.48500 * 109.47079 * 60.00156 * 3 2 1 7 7 C 1.39728 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.41467 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.47598 * 128.73977 * 0.02562 * 9 7 2 11 11 N 1.29854 * 105.36870 * 180.02562 * 10 9 7 12 12 O 1.20561 * 112.93740 * 0.02562 * 11 10 9 13 13 C 1.33768 * 113.30505 * 359.97438 * 12 11 10 14 14 C 1.50694 * 127.06421 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.75967 * 167.02056 * 14 13 12 16 16 C 1.55142 * 110.85555 * 290.74053 * 14 13 12 17 17 C 1.53859 * 106.89583 * 160.29353 * 16 14 13 18 18 C 1.54271 * 108.92973 * 312.74450 * 17 16 14 19 19 S 1.83093 * 104.64951 * 27.95318 * 18 17 16 20 20 H 0.97001 * 120.00056 * 0.02562 * 1 2 3 21 21 H 1.08003 * 127.32053 * 0.27076 * 10 9 7 22 22 H 1.08997 * 109.97634 * 279.65505 * 16 14 13 23 23 H 1.08999 * 109.97664 * 40.93761 * 16 14 13 24 24 H 1.09001 * 109.60828 * 192.82525 * 17 16 14 25 25 H 1.09008 * 109.46670 * 72.58084 * 17 16 14 26 26 H 1.09002 * 110.40008 * 269.16373 * 18 17 16 27 27 H 1.09005 * 110.50335 * 146.79429 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3965 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0888 -1.2100 0.0001 9 6 1.3014 -2.4352 0.0005 10 6 -0.1574 -2.6595 -0.0005 11 7 -0.3073 -3.9494 0.0005 12 8 0.7413 -4.5443 0.0024 13 6 1.8078 -3.7368 0.0025 14 6 3.2578 -4.1473 0.0051 15 1 3.9003 -3.2973 -0.2244 16 6 3.6476 -4.7894 1.3626 17 6 4.9281 -5.6069 1.1192 18 6 4.7409 -6.4643 -0.1496 19 16 3.5493 -5.5233 -1.1727 20 1 -0.4850 0.8401 -0.0004 21 1 -0.9351 -1.9101 -0.0055 22 1 3.8374 -4.0112 2.1018 23 1 2.8477 -5.4444 1.7080 24 1 5.1160 -6.2557 1.9747 25 1 5.7710 -4.9295 0.9818 26 1 4.3316 -7.4410 0.1088 27 1 5.6881 -6.5776 -0.6770 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260786310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = 18.465905 kcal Electronic energy + Delta-G solvation = -13283.019204 eV Core-core repulsion = 10940.648899 eV Total energy + Delta-G solvation = -2342.370304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.69126 -37.12903 -36.08981 -33.27118 -32.98517 -29.73153 -27.84214 -25.65493 -23.41372 -22.03483 -21.13659 -19.32786 -18.01571 -17.70026 -17.04824 -16.58271 -16.03053 -15.28317 -14.95146 -14.61332 -14.30540 -13.72687 -13.14245 -13.05542 -12.88784 -12.54666 -12.41806 -12.38943 -11.83535 -11.69269 -11.55003 -11.35174 -10.79559 -10.41902 -9.75399 -8.72696 -8.61811 -6.45660 0.63129 1.25902 1.41332 1.46219 1.57400 1.65299 1.99267 2.19523 2.94100 3.21002 3.76169 3.89891 4.09798 4.18166 4.21093 4.39312 4.59645 4.75547 4.82287 4.95141 5.02869 5.07195 5.23022 5.27944 5.40524 5.66399 6.21995 6.61060 6.78727 8.12627 8.31337 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.009121 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.828007 B = 3069.100192 C = 3610.412678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.451 4.451 8 H 0.091 0.909 9 C 0.000 4.000 10 C -0.063 4.063 11 N -0.408 5.408 12 O 0.078 5.922 13 C -0.242 4.242 14 C 0.107 3.893 15 H 0.106 0.894 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.057 4.057 19 S -0.374 6.374 20 H 0.291 0.709 21 H 0.189 0.811 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -3.656 3.144 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.109 0.891 9 C -0.007 4.007 10 C -0.243 4.243 11 N -0.111 5.111 12 O 0.007 5.993 13 C -0.306 4.306 14 C -0.021 4.021 15 H 0.124 0.876 16 C -0.161 4.161 17 C -0.156 4.156 18 C -0.205 4.205 19 S -0.146 6.146 20 H 0.102 0.898 21 H 0.206 0.794 22 H 0.110 0.890 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.922 -4.564 2.033 10.226 hybrid contribution 0.442 1.677 0.799 1.909 sum 9.364 -2.887 2.831 10.200 Atomic orbital electron populations 1.69691 1.09111 1.30825 1.37162 1.26887 0.95752 1.04956 0.90938 0.84868 0.79277 0.75077 0.78798 1.17465 1.19320 1.18915 1.19141 0.94777 0.88893 1.45318 0.89065 1.20270 0.90970 0.93329 0.96177 1.26692 0.98466 0.91178 1.07915 1.73051 1.07371 1.10602 1.20091 1.84069 1.09627 1.34839 1.70732 1.23319 0.89621 0.88594 1.29044 1.21658 0.88946 0.96541 0.94983 0.87601 1.22741 0.98411 0.99722 0.95203 1.22276 0.97242 0.98511 0.97524 1.24087 0.99423 1.00307 0.96662 1.87972 1.61201 1.31631 1.33797 0.89805 0.79403 0.88973 0.91722 0.87170 0.89315 0.88207 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.60 10.66 21.80 0.23 -42.37 15 2 C 0.03 1.36 5.49 85.18 0.47 1.83 15 3 Si 1.00 36.40 29.56 68.60 2.03 38.43 15 4 H -0.25 -8.72 7.11 99.48 0.71 -8.02 15 5 H -0.27 -9.53 7.11 99.48 0.71 -8.83 15 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.45 -23.34 9.25 23.43 0.22 -23.13 15 8 H 0.09 4.40 7.33 -2.91 -0.02 4.37 15 9 C 0.00 -0.03 6.24 -19.67 -0.12 -0.15 15 10 C -0.06 -3.54 11.25 87.46 0.98 -2.56 15 11 N -0.41 -22.38 11.96 -53.09 -0.63 -23.02 15 12 O 0.08 4.14 11.03 74.61 0.82 4.96 15 13 C -0.24 -12.07 6.37 26.03 0.17 -11.90 15 14 C 0.11 4.23 3.66 30.58 0.11 4.34 15 15 H 0.11 4.16 7.50 -2.39 -0.02 4.14 15 16 C -0.12 -3.70 5.88 31.62 0.19 -3.51 15 17 C -0.12 -2.50 6.39 31.31 0.20 -2.30 15 18 C -0.06 -1.35 7.34 72.41 0.53 -0.81 15 19 S -0.37 -13.80 22.68 -56.49 -1.28 -15.08 15 20 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 21 H 0.19 10.57 6.30 -2.91 -0.02 10.55 15 22 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.06 2.14 8.07 -2.39 -0.02 2.12 15 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.09 1.65 8.14 -2.38 -0.02 1.63 15 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.11 2.16 8.14 -2.38 -0.02 2.14 15 Total: -1.00 -61.84 247.26 5.08 -56.76 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.18 Total: 18.51 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 2.74 Total: -38.19 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -0.40 Total: -65.38 kcal Atomic # 8 Polarization: 4.14 SS G_CDS: 0.82 Total: 4.96 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: -13.80 SS G_CDS: -1.28 Total: -15.08 kcal Total: -61.84 5.08 -56.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260786310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.223 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds