Wall clock time and date at job start Mon Mar 30 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86798 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47319 * 274.98072 * 3 2 1 5 5 H 1.48501 * 109.47382 * 34.98465 * 3 2 1 6 6 H 1.48509 * 109.46877 * 154.98586 * 3 2 1 7 7 C 1.39731 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99339 * 186.22120 * 7 2 1 9 9 C 1.41464 * 120.00163 * 6.21937 * 7 2 1 10 10 C 1.47611 * 128.74172 * 353.30370 * 9 7 2 11 11 N 1.29852 * 105.36550 * 180.02562 * 10 9 7 12 12 O 1.20570 * 112.93741 * 359.69134 * 11 10 9 13 13 C 1.33753 * 113.30610 * 0.51855 * 12 11 10 14 14 C 1.50697 * 127.06672 * 179.77412 * 13 12 11 15 15 H 1.08999 * 110.30953 * 196.85518 * 14 13 12 16 16 C 1.53707 * 110.34118 * 74.68433 * 14 13 12 17 17 C 1.52947 * 112.48891 * 243.95521 * 16 14 13 18 18 C 1.55150 * 108.81071 * 329.99083 * 17 16 14 19 19 S 1.83393 * 110.34088 * 319.13863 * 14 13 12 20 20 H 0.97011 * 119.99890 * 0.02562 * 1 2 3 21 21 H 1.07990 * 127.31673 * 0.03904 * 10 9 7 22 22 H 1.08997 * 108.89206 * 123.16442 * 16 14 13 23 23 H 1.08995 * 108.77616 * 4.66859 * 16 14 13 24 24 H 1.08999 * 109.60361 * 89.83180 * 17 16 14 25 25 H 1.08998 * 109.60261 * 210.14884 * 17 16 14 26 26 H 1.09006 * 111.13222 * 159.26162 * 18 17 16 27 27 H 1.09008 * 111.12964 * 283.43249 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.3862 2.1072 -1.3947 5 1 1.4981 2.6200 0.8027 6 1 3.5903 1.4120 0.5921 7 6 2.0087 -1.2101 0.0005 8 1 3.0839 -1.2128 0.1019 9 6 1.3076 -2.4317 -0.1316 10 6 -0.1502 -2.6632 -0.1467 11 7 -0.2934 -3.9459 -0.2894 12 8 0.7582 -4.5302 -0.3688 13 6 1.8205 -3.7223 -0.2802 14 6 3.2725 -4.1216 -0.3358 15 1 3.9005 -3.3200 0.0530 16 6 3.6772 -4.4653 -1.7783 17 6 4.0828 -5.9313 -1.9386 18 6 4.6891 -6.4317 -0.6010 19 16 3.5456 -5.6666 0.6137 20 1 -0.4850 0.8401 -0.0004 21 1 -0.9315 -1.9230 -0.0581 22 1 4.5161 -3.8333 -2.0696 23 1 2.8346 -4.2582 -2.4379 24 1 3.2056 -6.5281 -2.1885 25 1 4.8243 -6.0209 -2.7324 26 1 4.6553 -7.5194 -0.5368 27 1 5.7065 -6.0637 -0.4687 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260786323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:22 Heat of formation + Delta-G solvation = 35.617456 kcal Electronic energy + Delta-G solvation = -13322.578658 eV Core-core repulsion = 10980.952101 eV Total energy + Delta-G solvation = -2341.626557 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.64029 -35.80640 -34.21549 -31.40101 -31.13899 -28.12344 -26.00506 -24.45264 -21.37856 -20.64185 -19.18994 -17.36779 -16.30778 -15.88850 -15.46161 -14.98019 -14.38746 -13.78406 -13.54384 -12.99547 -12.51005 -12.31790 -11.56599 -11.43768 -11.34507 -11.13538 -10.94118 -10.82072 -10.26599 -10.17362 -9.76654 -9.48593 -9.23132 -8.38241 -7.80853 -7.15780 -6.89626 -4.50906 2.22750 2.76194 2.92954 3.01041 3.05284 3.35751 3.83471 3.94146 4.78835 4.90899 5.06717 5.13623 5.40606 5.52247 5.63126 5.81482 5.99496 6.08976 6.27346 6.40348 6.51446 6.67618 6.82677 7.10224 7.31662 7.73116 8.17280 8.55445 8.70128 10.11298 10.17541 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.009043 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.476850 B = 3095.515503 C = 3574.011542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.072 3.928 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.034 3.966 10 C -0.042 4.042 11 N -0.395 5.395 12 O 0.081 5.919 13 C -0.250 4.250 14 C 0.110 3.890 15 H 0.106 0.894 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.077 4.077 19 S -0.309 6.309 20 H 0.283 0.717 21 H 0.194 0.806 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -3.612 -3.057 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.145 4.145 3 Si 0.747 3.253 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.027 3.973 10 C -0.223 4.223 11 N -0.098 5.098 12 O 0.010 5.990 13 C -0.313 4.313 14 C -0.019 4.019 15 H 0.124 0.876 16 C -0.167 4.167 17 C -0.159 4.159 18 C -0.225 4.225 19 S -0.080 6.080 20 H 0.093 0.907 21 H 0.211 0.789 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.069 -4.665 -2.037 7.922 hybrid contribution 1.194 2.003 -0.942 2.515 sum 7.263 -2.662 -2.979 8.289 Atomic orbital electron populations 1.69650 1.07596 1.29402 1.37095 1.25897 0.94933 1.01573 0.92073 0.86043 0.80225 0.79903 0.79089 1.19397 1.20087 1.18459 1.18787 0.94637 0.88591 1.43647 0.89973 1.19838 0.90897 0.91923 0.94621 1.26624 0.97873 0.91101 1.06689 1.73085 1.06679 1.10956 1.19039 1.84131 1.09214 1.34973 1.70647 1.22698 0.88348 0.89833 1.30429 1.21253 0.91930 0.94695 0.93983 0.87578 1.22221 1.02148 0.95489 0.96794 1.22355 1.00867 0.96441 0.96275 1.24199 0.99942 1.02811 0.95554 1.87988 1.60351 1.24923 1.34752 0.90665 0.78949 0.91390 0.89960 0.90612 0.90929 0.88449 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.24 10.70 55.54 0.59 -19.64 15 2 C 0.07 1.74 5.49 -17.35 -0.10 1.64 15 3 Si 0.92 18.11 29.56 -169.99 -5.03 13.08 15 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 15 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 7 C -0.43 -10.91 9.25 -37.80 -0.35 -11.26 15 8 H 0.08 1.98 7.36 -52.49 -0.39 1.60 15 9 C 0.03 0.91 6.23 -104.31 -0.65 0.26 15 10 C -0.04 -1.14 11.25 -14.56 -0.16 -1.30 15 11 N -0.39 -10.48 11.96 32.03 0.38 -10.10 15 12 O 0.08 2.10 10.97 18.02 0.20 2.29 15 13 C -0.25 -6.11 6.05 -33.78 -0.20 -6.32 15 14 C 0.11 2.20 3.73 -27.52 -0.10 2.10 15 15 H 0.11 2.11 7.54 -51.93 -0.39 1.72 15 16 C -0.13 -2.09 6.03 -26.39 -0.16 -2.25 15 17 C -0.12 -1.63 6.35 -25.62 -0.16 -1.80 15 18 C -0.08 -1.04 7.49 38.30 0.29 -0.75 15 19 S -0.31 -5.83 22.56 -107.50 -2.43 -8.26 15 20 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 21 H 0.19 5.16 6.33 -52.49 -0.33 4.83 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.08 1.48 7.61 -51.93 -0.40 1.09 15 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.08 0.99 8.14 -51.92 -0.42 0.57 15 LS Contribution 246.81 15.07 3.72 3.72 Total: -1.00 -27.85 246.81 -6.91 -34.76 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.75 Total: 3.82 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.60 Total: -19.67 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.98 Total: -29.74 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.20 Total: 2.29 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -2.43 Total: -8.26 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.85 -6.91 -34.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260786323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.375 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds