Wall clock time and date at job start Mon Mar 30 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31003 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48503 * 109.47073 * 274.71282 * 3 2 1 5 5 H 1.48498 * 109.46790 * 34.71315 * 3 2 1 6 6 H 1.48499 * 109.47169 * 154.71352 * 3 2 1 7 7 C 1.39728 * 120.00413 * 179.72987 * 2 1 3 8 8 H 1.08004 * 120.00423 * 173.64847 * 7 2 1 9 9 C 1.41482 * 119.99891 * 353.64662 * 7 2 1 10 10 C 1.47602 * 128.73715 * 6.22520 * 9 7 2 11 11 N 1.29853 * 105.36062 * 179.83292 * 10 9 7 12 12 O 1.20558 * 112.94014 * 0.45798 * 11 10 9 13 13 C 1.33762 * 113.30682 * 359.69065 * 12 11 10 14 14 C 1.50697 * 127.06701 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.60837 * 178.84556 * 14 13 12 16 16 C 1.53865 * 109.60704 * 299.00535 * 14 13 12 17 17 C 1.55136 * 106.89777 * 167.17607 * 16 14 13 18 18 S 1.83456 * 102.20342 * 317.87784 * 17 16 14 19 19 C 1.54271 * 109.61014 * 58.50066 * 14 13 12 20 20 H 0.96997 * 120.00372 * 0.27321 * 1 2 3 21 21 H 1.07994 * 127.31753 * 359.97438 * 10 9 7 22 22 H 1.09006 * 109.96893 * 286.53081 * 16 14 13 23 23 H 1.08994 * 109.97704 * 47.81211 * 16 14 13 24 24 H 1.08996 * 110.85511 * 199.70048 * 17 16 14 25 25 H 1.08996 * 111.03442 * 76.14031 * 17 16 14 26 26 H 1.08999 * 110.40270 * 330.92007 * 19 14 13 27 27 H 1.08994 * 110.40320 * 93.21977 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.3918 2.1040 -1.3954 5 1 1.4947 2.6218 0.7973 6 1 3.5878 1.4136 0.5980 7 6 2.0088 -1.2100 0.0057 8 1 3.0838 -1.2134 -0.0978 9 6 1.3079 -2.4309 0.1471 10 6 -0.1497 -2.6611 0.1759 11 7 -0.2926 -3.9438 0.3197 12 8 0.7592 -4.5286 0.3919 13 6 1.8213 -3.7206 0.3003 14 6 3.2735 -4.1201 0.3514 15 1 3.9003 -3.2368 0.2289 16 6 3.5795 -4.7821 1.7063 17 6 4.9707 -5.4559 1.5749 18 16 4.8778 -6.2154 -0.0925 19 6 3.5731 -5.1283 -0.7771 20 1 -0.4850 0.8400 -0.0040 21 1 -0.9313 -1.9206 0.0925 22 1 3.6041 -4.0272 2.4923 23 1 2.8223 -5.5324 1.9336 24 1 5.1064 -6.2185 2.3417 25 1 5.7697 -4.7159 1.6203 26 1 2.6815 -5.7084 -1.0151 27 1 3.9356 -4.6091 -1.6642 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260801378.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:27 Heat of formation + Delta-G solvation = 32.030709 kcal Electronic energy + Delta-G solvation = -13352.862549 eV Core-core repulsion = 11011.080459 eV Total energy + Delta-G solvation = -2341.782090 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.72191 -36.06212 -34.19017 -31.30259 -30.49082 -28.58498 -26.10778 -24.23727 -21.70669 -20.83095 -19.00141 -17.34151 -16.34247 -15.72762 -15.71883 -14.96901 -14.64281 -13.69167 -13.50360 -12.83599 -12.45197 -12.33005 -11.61980 -11.49683 -11.44974 -11.30878 -11.06717 -10.73923 -10.35063 -10.19367 -9.79061 -9.63156 -9.30948 -8.43462 -7.84378 -7.41727 -6.90665 -4.53383 2.17049 2.61899 2.82995 2.99890 3.03741 3.21127 3.82393 3.90352 4.73095 5.04699 5.07024 5.19238 5.42376 5.48747 5.59998 5.83378 6.07969 6.09121 6.23280 6.41650 6.47364 6.72034 6.87387 7.09754 7.32705 7.70161 8.15605 8.54439 8.69677 10.10377 10.11242 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.008801 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.402205 B = 3180.829892 C = 3780.468743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.081 0.919 9 C 0.029 3.971 10 C -0.040 4.040 11 N -0.397 5.397 12 O 0.068 5.932 13 C -0.257 4.257 14 C 0.039 3.961 15 H 0.094 0.906 16 C -0.122 4.122 17 C -0.066 4.066 18 S -0.327 6.327 19 C -0.055 4.055 20 H 0.282 0.718 21 H 0.193 0.807 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 -2.589 1.672 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.144 4.144 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.100 0.900 9 C 0.024 3.976 10 C -0.220 4.220 11 N -0.101 5.101 12 O -0.002 6.002 13 C -0.319 4.319 14 C 0.018 3.982 15 H 0.113 0.887 16 C -0.161 4.161 17 C -0.214 4.214 18 S -0.101 6.101 19 C -0.203 4.203 20 H 0.093 0.907 21 H 0.210 0.790 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.037 -4.137 1.266 7.427 hybrid contribution 0.123 2.549 0.350 2.576 sum 6.160 -1.588 1.615 6.563 Atomic orbital electron populations 1.69634 1.07576 1.29356 1.37487 1.25877 0.94914 1.01531 0.92086 0.86070 0.80241 0.80008 0.79102 1.19443 1.20056 1.18478 1.18754 0.94560 0.88636 1.44080 0.90049 1.19870 0.90807 0.92127 0.94845 1.26662 0.98079 0.91083 1.06207 1.73089 1.06403 1.11010 1.19618 1.84046 1.09605 1.35477 1.71061 1.23030 0.88671 0.89953 1.30230 1.19700 0.89789 0.97371 0.91339 0.88743 1.22679 0.94253 1.00417 0.98702 1.24212 1.00844 1.01792 0.94584 1.87273 1.54416 1.50802 1.17616 1.24232 0.97698 0.97519 1.00849 0.90712 0.78984 0.89760 0.90261 0.88541 0.89405 0.88762 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.10 10.70 55.54 0.59 -19.51 15 2 C 0.07 1.73 5.49 -17.35 -0.10 1.63 15 3 Si 0.92 17.95 29.56 -169.99 -5.03 12.92 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.43 -10.79 9.21 -37.79 -0.35 -11.14 15 8 H 0.08 1.93 7.22 -52.48 -0.38 1.55 15 9 C 0.03 0.74 6.23 -104.31 -0.65 0.09 15 10 C -0.04 -1.05 11.25 -14.57 -0.16 -1.21 15 11 N -0.40 -10.15 11.96 32.03 0.38 -9.77 15 12 O 0.07 1.64 10.97 18.00 0.20 1.84 15 13 C -0.26 -5.92 6.05 -33.78 -0.20 -6.12 15 14 C 0.04 0.72 3.01 -90.66 -0.27 0.45 15 15 H 0.09 1.76 7.29 -51.93 -0.38 1.38 15 16 C -0.12 -1.94 5.77 -25.15 -0.15 -2.08 15 17 C -0.07 -0.90 7.38 38.29 0.28 -0.62 15 18 S -0.33 -5.17 23.26 -107.50 -2.50 -7.67 15 19 C -0.05 -0.94 6.80 37.82 0.26 -0.68 15 20 H 0.28 6.35 8.30 -40.82 -0.34 6.01 15 21 H 0.19 5.06 6.33 -52.49 -0.33 4.73 15 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.08 1.33 8.11 -51.93 -0.42 0.91 15 24 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.09 1.71 7.81 -51.93 -0.41 1.30 15 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 LS Contribution 246.59 15.07 3.72 3.72 Total: -1.00 -26.53 246.59 -6.72 -33.25 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.74 Total: 4.92 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.34 Total: -19.69 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.98 Total: -29.28 kcal Atomic # 8 Polarization: 1.64 SS G_CDS: 0.20 Total: 1.84 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.50 Total: -7.67 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.53 -6.72 -33.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801378.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.276 kcal (2) G-P(sol) polarization free energy of solvation -26.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds