Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31003 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48503 * 109.47073 * 274.71282 * 3 2 1 5 5 H 1.48498 * 109.46790 * 34.71315 * 3 2 1 6 6 H 1.48499 * 109.47169 * 154.71352 * 3 2 1 7 7 C 1.39728 * 120.00413 * 179.72987 * 2 1 3 8 8 H 1.08004 * 120.00423 * 173.64847 * 7 2 1 9 9 C 1.41482 * 119.99891 * 353.64662 * 7 2 1 10 10 C 1.47602 * 128.73715 * 6.22520 * 9 7 2 11 11 N 1.29853 * 105.36062 * 179.83292 * 10 9 7 12 12 O 1.20558 * 112.94014 * 0.45798 * 11 10 9 13 13 C 1.33762 * 113.30682 * 359.69065 * 12 11 10 14 14 C 1.50697 * 127.06701 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.60837 * 178.84556 * 14 13 12 16 16 C 1.53865 * 109.60704 * 299.00535 * 14 13 12 17 17 C 1.55136 * 106.89777 * 167.17607 * 16 14 13 18 18 S 1.83456 * 102.20342 * 317.87784 * 17 16 14 19 19 C 1.54271 * 109.61014 * 58.50066 * 14 13 12 20 20 H 0.96997 * 120.00372 * 0.27321 * 1 2 3 21 21 H 1.07994 * 127.31753 * 359.97438 * 10 9 7 22 22 H 1.09006 * 109.96893 * 286.53081 * 16 14 13 23 23 H 1.08994 * 109.97704 * 47.81211 * 16 14 13 24 24 H 1.08996 * 110.85511 * 199.70048 * 17 16 14 25 25 H 1.08996 * 111.03442 * 76.14031 * 17 16 14 26 26 H 1.08999 * 110.40270 * 330.92007 * 19 14 13 27 27 H 1.08994 * 110.40320 * 93.21977 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.3918 2.1040 -1.3954 5 1 1.4947 2.6218 0.7973 6 1 3.5878 1.4136 0.5980 7 6 2.0088 -1.2100 0.0057 8 1 3.0838 -1.2134 -0.0978 9 6 1.3079 -2.4309 0.1471 10 6 -0.1497 -2.6611 0.1759 11 7 -0.2926 -3.9438 0.3197 12 8 0.7592 -4.5286 0.3919 13 6 1.8213 -3.7206 0.3003 14 6 3.2735 -4.1201 0.3514 15 1 3.9003 -3.2368 0.2289 16 6 3.5795 -4.7821 1.7063 17 6 4.9707 -5.4559 1.5749 18 16 4.8778 -6.2154 -0.0925 19 6 3.5731 -5.1283 -0.7771 20 1 -0.4850 0.8400 -0.0040 21 1 -0.9313 -1.9206 0.0925 22 1 3.6041 -4.0272 2.4923 23 1 2.8223 -5.5324 1.9336 24 1 5.1064 -6.2185 2.3417 25 1 5.7697 -4.7159 1.6203 26 1 2.6815 -5.7084 -1.0151 27 1 3.9356 -4.6091 -1.6642 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260801378.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = 18.335206 kcal Electronic energy + Delta-G solvation = -13353.456431 eV Core-core repulsion = 11011.080459 eV Total energy + Delta-G solvation = -2342.375972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.71144 -37.51159 -36.01962 -33.24799 -32.14277 -30.10006 -27.95991 -25.65408 -23.54482 -22.43964 -20.79210 -19.20044 -17.89084 -17.61498 -17.21579 -16.64698 -16.18581 -15.38326 -14.80086 -14.44309 -14.17884 -13.69525 -13.21089 -13.06752 -12.86908 -12.71631 -12.69258 -12.31088 -11.89938 -11.74043 -11.53790 -11.29603 -10.89949 -10.40087 -9.73283 -8.69541 -8.65719 -6.43062 0.92076 1.01171 1.41615 1.42282 1.52241 1.56250 1.99516 2.20308 2.97283 3.21318 3.71268 3.84717 4.07756 4.18507 4.23429 4.31042 4.56768 4.68964 4.79855 4.82825 5.00499 5.14423 5.23283 5.31696 5.49036 5.69642 6.25050 6.66040 6.82940 8.14059 8.34138 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.008801 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.402205 B = 3180.829892 C = 3780.468743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.456 4.456 8 H 0.091 0.909 9 C -0.008 4.008 10 C -0.064 4.064 11 N -0.410 5.410 12 O 0.072 5.928 13 C -0.240 4.240 14 C 0.037 3.963 15 H 0.097 0.903 16 C -0.117 4.117 17 C -0.052 4.052 18 S -0.330 6.330 19 C -0.053 4.053 20 H 0.289 0.711 21 H 0.185 0.815 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.800 -2.343 2.251 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.184 4.184 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.487 4.487 8 H 0.109 0.891 9 C -0.013 4.013 10 C -0.243 4.243 11 N -0.114 5.114 12 O 0.002 5.998 13 C -0.303 4.303 14 C 0.016 3.984 15 H 0.115 0.885 16 C -0.156 4.156 17 C -0.199 4.199 18 S -0.105 6.105 19 C -0.201 4.201 20 H 0.100 0.900 21 H 0.202 0.798 22 H 0.110 0.890 23 H 0.088 0.912 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.154 -3.902 1.844 9.225 hybrid contribution -0.539 2.364 0.185 2.432 sum 7.615 -1.537 2.028 8.029 Atomic orbital electron populations 1.69698 1.09063 1.30659 1.37786 1.26819 0.95672 1.04825 0.91098 0.84966 0.78994 0.75218 0.79242 1.18897 1.19570 1.17604 1.19065 0.95148 0.89126 1.45326 0.89122 1.20277 0.90773 0.93689 0.96549 1.26670 0.98721 0.91261 1.07648 1.73063 1.07005 1.10821 1.20510 1.84013 1.09873 1.35697 1.70232 1.23792 0.90118 0.89059 1.27307 1.19896 0.86632 0.98249 0.93630 0.88528 1.22587 0.95699 1.00318 0.97019 1.24301 0.99604 1.02563 0.93476 1.87331 1.53236 1.50615 1.19281 1.24043 0.98040 0.97391 1.00671 0.90025 0.79803 0.89025 0.91194 0.85983 0.87352 0.90171 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.34 10.70 21.79 0.23 -42.11 15 2 C 0.03 1.37 5.49 85.18 0.47 1.84 15 3 Si 1.00 36.03 29.56 68.60 2.03 38.06 15 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 15 7 C -0.46 -22.97 9.21 23.43 0.22 -22.75 15 8 H 0.09 4.23 7.22 -2.91 -0.02 4.21 15 9 C -0.01 -0.40 6.23 -19.66 -0.12 -0.53 15 10 C -0.06 -3.47 11.25 87.46 0.98 -2.48 15 11 N -0.41 -21.41 11.96 -53.10 -0.63 -22.05 15 12 O 0.07 3.53 10.97 74.67 0.82 4.35 15 13 C -0.24 -11.04 6.05 26.03 0.16 -10.88 15 14 C 0.04 1.31 3.01 -10.82 -0.03 1.28 15 15 H 0.10 3.44 7.29 -2.39 -0.02 3.42 15 16 C -0.12 -3.46 5.77 31.62 0.18 -3.28 15 17 C -0.05 -1.22 7.38 72.71 0.54 -0.68 15 18 S -0.33 -9.61 23.26 -56.49 -1.31 -10.93 15 19 C -0.05 -1.75 6.80 72.41 0.49 -1.26 15 20 H 0.29 13.13 8.30 -92.71 -0.77 12.36 15 21 H 0.19 10.13 6.33 -2.91 -0.02 10.11 15 22 H 0.09 2.59 8.14 -2.38 -0.02 2.57 15 23 H 0.07 2.21 8.11 -2.39 -0.02 2.19 15 24 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.11 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.08 2.86 7.81 -2.39 -0.02 2.84 15 27 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 Total: -1.00 -56.80 246.59 5.19 -51.61 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.18 Total: 19.82 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 2.88 Total: -38.75 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.40 Total: -64.16 kcal Atomic # 8 Polarization: 3.53 SS G_CDS: 0.82 Total: 4.35 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 16 Polarization: -9.61 SS G_CDS: -1.31 Total: -10.93 kcal Total: -56.80 5.19 -51.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801378.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.945 kcal (2) G-P(sol) polarization free energy of solvation -56.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds