Wall clock time and date at job start Mon Mar 30 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47025 * 264.83688 * 3 2 1 5 5 H 1.48498 * 109.46957 * 24.83731 * 3 2 1 6 6 H 1.48493 * 109.46762 * 144.83554 * 3 2 1 7 7 C 1.37874 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99806 * 4.90526 * 7 2 1 9 9 C 1.50701 * 120.00048 * 184.89961 * 7 2 1 10 10 H 1.08996 * 109.72587 * 335.65118 * 9 7 2 11 11 C 1.53421 * 109.73048 * 96.34432 * 9 7 2 12 12 C 1.53015 * 109.81420 * 170.30695 * 11 9 7 13 13 C 1.53415 * 109.81871 * 288.02882 * 12 11 9 14 14 C 1.50792 * 108.12143 * 50.64360 * 13 12 11 15 15 C 1.34090 * 128.94997 * 163.28370 * 14 13 12 16 16 Cl 1.73602 * 125.97846 * 0.38660 * 15 14 13 17 17 N 1.36660 * 108.04175 * 180.36898 * 15 14 13 18 18 H 0.97000 * 125.60966 * 179.97438 * 17 15 14 19 19 C 1.36806 * 108.78815 * 359.93478 * 17 15 14 20 20 C 1.33942 * 108.06378 * 359.93879 * 19 17 15 21 21 H 0.96998 * 120.00442 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.41220 * 290.41325 * 11 9 7 23 23 H 1.08997 * 109.41102 * 50.19813 * 11 9 7 24 24 H 1.09001 * 109.41306 * 167.92088 * 12 11 9 25 25 H 1.09008 * 109.41798 * 48.13918 * 12 11 9 26 26 H 1.08999 * 109.73538 * 290.98494 * 13 12 11 27 27 H 1.09003 * 109.77617 * 170.32344 * 13 12 11 28 28 H 1.08002 * 125.97108 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6057 1.9835 -1.3944 5 1 1.3963 2.6817 0.5881 6 1 3.4878 1.4741 0.8063 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0809 9 6 3.5074 -1.1964 0.1109 10 1 3.9041 -0.2449 -0.2430 11 6 3.9181 -1.4186 1.5724 12 6 5.4264 -1.6619 1.6561 13 6 5.7613 -3.0499 1.0949 14 6 5.1097 -3.1782 -0.2589 15 6 5.3627 -4.0611 -1.2359 16 17 6.5433 -5.3326 -1.1810 17 7 4.5281 -3.7850 -2.2823 18 1 4.4968 -4.2687 -3.1225 19 6 3.7435 -2.7149 -1.9497 20 6 4.0773 -2.3236 -0.7129 21 1 -0.4851 0.8400 0.0004 22 1 3.6601 -0.5370 2.1592 23 1 3.3887 -2.2846 1.9697 24 1 5.7453 -1.6053 2.6969 25 1 5.9490 -0.9010 1.0763 26 1 5.3759 -3.8200 1.7632 27 1 6.8415 -3.1566 0.9950 28 1 2.9866 -2.2645 -2.5748 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260927100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:12 Heat of formation + Delta-G solvation = 21.380768 kcal Electronic energy + Delta-G solvation = -13454.888177 eV Core-core repulsion = 11110.600565 eV Total energy + Delta-G solvation = -2344.287613 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76796 -36.39402 -35.88123 -32.80263 -30.66447 -29.64818 -26.91388 -24.96961 -22.19031 -20.70917 -19.52494 -17.70318 -17.31551 -16.75989 -14.53481 -14.38583 -13.81206 -13.65685 -13.32238 -12.93536 -12.49350 -11.93228 -11.69019 -11.49979 -11.30412 -11.12541 -10.91565 -10.69122 -10.25466 -9.91510 -9.77751 -9.30941 -9.06033 -8.53612 -7.79540 -7.35349 -6.03556 -4.01689 2.15102 2.62536 3.31779 3.40311 3.43486 3.62787 3.95867 4.45892 5.26838 5.48233 5.64911 5.75705 5.86576 6.19316 6.36204 6.39895 6.48172 6.53431 6.62228 6.73866 6.89007 7.07352 7.22020 7.42943 7.58674 7.72291 7.89348 8.00051 8.61371 9.04137 9.60068 11.09705 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.008911 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.008164 B = 3141.548829 C = 3516.009072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.077 3.923 10 H 0.039 0.961 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.041 4.041 14 C -0.138 4.138 15 C 0.044 3.956 16 Cl -0.049 7.049 17 N -0.570 5.570 18 H 0.409 0.591 19 C 0.014 3.986 20 C -0.111 4.111 21 H 0.263 0.737 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -6.058 -2.163 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.539 4.539 8 H 0.091 0.909 9 C 0.058 3.942 10 H 0.057 0.943 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.079 4.079 14 C -0.147 4.147 15 C -0.092 4.092 16 Cl -0.021 7.021 17 N -0.171 5.171 18 H 0.245 0.755 19 C -0.114 4.114 20 C -0.118 4.118 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.345 -6.117 -2.280 13.089 hybrid contribution 0.384 0.440 -0.541 0.796 sum 11.728 -5.677 -2.822 13.332 Atomic orbital electron populations 1.69907 1.06291 1.26847 1.51050 1.25059 0.94645 0.98810 0.94559 0.86909 0.80331 0.83861 0.78787 1.20278 1.21740 1.18765 1.20963 0.88664 0.94424 1.49804 0.90860 1.17822 0.95718 0.90964 0.89711 0.94331 1.21825 0.92402 1.00834 0.99592 1.21642 0.98808 0.96015 0.99122 1.19997 0.98130 0.97780 0.92002 1.19299 1.01517 0.97808 0.96096 1.20076 0.98336 0.98077 0.92670 1.98316 1.55285 1.50372 1.98125 1.41963 1.31592 1.28653 1.14892 0.75489 1.21519 0.99295 0.91552 0.99009 1.19923 0.96992 1.00376 0.94460 0.92753 0.93159 0.92446 0.93097 0.92707 0.91684 0.92250 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.28 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.87 21.10 27.00 -169.99 -4.59 16.51 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.26 -6.09 6.81 56.52 0.38 -5.70 15 7 C -0.50 -13.63 8.55 -34.44 -0.29 -13.92 15 8 H 0.07 2.20 8.06 -52.49 -0.42 1.78 15 9 C 0.08 1.80 2.14 -92.66 -0.20 1.60 15 10 H 0.04 0.92 5.28 -51.93 -0.27 0.65 15 11 C -0.11 -2.30 5.16 -26.51 -0.14 -2.43 15 12 C -0.12 -2.07 5.85 -26.51 -0.16 -2.23 15 13 C -0.04 -0.69 6.18 -27.62 -0.17 -0.87 15 14 C -0.14 -2.60 5.92 -104.79 -0.62 -3.22 15 15 C 0.04 0.75 7.77 -16.86 -0.13 0.61 15 16 Cl -0.05 -0.69 29.19 -51.86 -1.51 -2.20 15 17 N -0.57 -9.07 6.10 -10.24 -0.06 -9.13 15 18 H 0.41 5.03 8.96 -40.82 -0.37 4.66 15 19 C 0.01 0.27 11.49 -16.84 -0.19 0.07 15 20 C -0.11 -2.35 5.43 -104.84 -0.57 -2.92 15 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.06 1.25 8.07 -51.93 -0.42 0.83 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.05 0.96 8.10 -51.92 -0.42 0.54 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.17 3.13 8.06 -52.49 -0.42 2.71 15 LS Contribution 248.64 15.07 3.75 3.75 Total: -1.00 -29.58 248.64 -7.38 -36.96 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.17 Total: 1.82 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.57 Total: -21.43 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.71 Total: -35.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.51 Total: -2.20 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.58 -7.38 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.339 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds